Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 2.1e-251 872.1 500 100.0
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 4.6e-142 508.8 505 67.1
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 2.6e-137 493.0 506 60.5
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 2.9e-136 489.6 574 55.9
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 5.7e-132 475.3 651 48.8
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 2.8e-131 473.0 549 56.5
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 4.1e-130 469.2 549 56.3
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 2.0e-129 466.8 548 56.2
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 2.9e-128 463.0 506 58.3
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 3.8e-128 462.6 646 48.6
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 7.2e-127 458.4 531 55.6
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 4.7e-126 455.7 545 56.0
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 1.4e-122 444.1 507 62.1
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 3.1e-122 443.0 507 62.1
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 2.5e-119 433.3 541 55.3
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.6e-113 414.1 532 53.8
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 1.6e-113 414.1 531 58.9
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 1.6e-113 414.1 531 58.9
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 3.2e-111 406.4 506 52.4
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 6.1e-102 375.6 559 48.5
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 9.1e-98 361.7 535 49.5
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 1.7e-91 340.9 560 46.8
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 1.5e-79 301.2 585 40.2
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.1e-70 270.8 512 40.0
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 2.0e-60 237.7 517 38.3
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 7.6e-60 235.7 491 39.5
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.6e-44 184.1 176 58.0
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 4.8e-38 163.3 506 31.4
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 4.5e-36 156.8 504 31.3
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 6.5e-35 152.9 524 31.1
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 4.2e-34 150.2 508 30.9
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 4.6e-33 146.7 501 30.3
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 4.6e-33 146.7 502 29.5
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 7.9e-33 146.0 507 29.0
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 1.0e-32 145.6 177 66.7
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 2.3e-32 144.4 135 61.5
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 2.3e-32 144.4 513 29.0
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.1e-31 142.1 522 29.3
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 2.5e-31 141.0 519 28.3
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 5.7e-31 139.8 499 29.7
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 7.4e-31 139.4 126 65.1
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 9.6e-31 139.0 178 65.2
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.8e-30 137.5 500 28.2
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 3.7e-30 137.1 503 31.0
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 8.2e-30 136.0 519 29.5
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 1.1e-29 135.6 501 29.1
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 1.4e-29 135.2 513 30.4
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 3.1e-29 134.0 499 30.7
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 5.3e-29 133.3 219 39.7
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 6.9e-29 132.9 502 28.5
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.2e-28 132.1 498 28.5
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.5e-28 131.7 495 28.5
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.5e-28 131.7 495 28.5
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.6e-28 131.0 499 29.1
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 2.2e-27 127.9 493 28.6
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.2e-27 127.9 504 32.7
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.9e-27 127.5 274 38.7
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 3.8e-27 127.1 514 29.8
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 3.8e-27 127.1 177 41.8
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 3.8e-27 127.1 166 47.0
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 1.1e-26 125.6 496 26.2
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.5e-26 124.4 536 31.9
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.5e-26 124.4 499 27.5
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 3.2e-26 124.0 530 30.6
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 3.2e-26 124.0 503 27.8
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 5.5e-26 123.2 102 54.9
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 5.5e-26 123.2 481 29.5
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 7.2e-26 122.9 509 29.9
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 7.2e-26 122.9 243 39.1
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 1.2e-25 122.1 512 35.7
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 1.2e-25 122.1 512 28.5
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 1.6e-25 121.7 515 28.5
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 2.1e-25 121.3 518 33.6
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 2.7e-25 120.9 501 29.9
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 2.7e-25 120.9 177 42.4
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 3.5e-25 120.6 227 39.6
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.6e-25 120.2 519 33.3
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 6.1e-25 119.8 126 57.9
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 7.9e-25 119.4 205 38.5
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.3e-24 118.6 496 27.4
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 2.3e-24 117.9 503 29.4
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 3.9e-24 117.1 239 37.2
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 5.1e-24 116.7 503 29.2
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 5.1e-24 116.7 512 27.7
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 8.7e-24 115.9 495 27.9
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 8.7e-24 115.9 120 51.7
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 1.1e-23 115.5 514 31.9
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 1.1e-23 115.5 268 38.1
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 1.9e-23 114.8 516 31.4
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 2.5e-23 114.4 519 27.6
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 7.4e-23 112.8 510 33.9
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.4e-23 112.8 537 29.1
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.3e-22 112.1 516 29.3
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.8e-22 110.9 499 28.1
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 3.7e-22 110.5 497 25.6
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 3.7e-22 110.5 131 42.0
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 3.7e-22 110.5 221 37.6
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 3.7e-22 110.5 498 29.3
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 4.8e-22 110.2 155 41.3
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 4.8e-22 110.2 237 37.6
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 6.3e-22 109.8 507 27.0
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 8.2e-22 109.4 220 39.1
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 8.2e-22 109.4 507 27.2
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 8.2e-22 109.4 510 26.7
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.1e-21 109.0 155 40.6
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.4e-21 108.6 224 38.8
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 1.8e-21 108.2 208 35.1
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.8e-21 108.2 231 39.0
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.1e-21 107.5 182 39.6
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 6.9e-21 106.3 160 42.5
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 1.2e-20 105.5 127 45.7
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 1.5e-20 105.1 520 28.7
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 2.6e-20 104.4 497 25.4
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 1.0e-19 102.4 324 32.1
BcaB07g33758 Brassica carinata HOM05D010442 ORTHO05D010690 1.7e-19 101.7 126 51.6
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.2e-19 101.3 522 26.2
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 2.9e-19 100.9 500 27.0
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 3.8e-19 100.5 126 40.5
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 5.0e-19 100.1 240 35.8
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 1.1e-18 99.0 496 25.8
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 1.1e-18 99.0 504 28.8
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 2.5e-18 97.8 489 28.2
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 3.2e-18 97.4 277 33.9
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 3.2e-18 97.4 277 33.9
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 5.5e-18 96.7 499 25.9
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 7.2e-18 96.3 519 27.6
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 9.4e-18 95.9 500 31.4
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 2.1e-17 94.7 501 26.1
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 2.1e-17 94.7 230 33.5
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 3.6e-17 94.0 505 24.2
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 7.9e-17 92.8 123 43.1
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 1.4e-16 92.0 516 25.8
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 5.1e-16 90.1 504 24.2
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 2.5e-15 87.8 529 30.2
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.3e-15 87.4 219 32.0
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 7.4e-15 86.3 161 32.9
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 9.7e-15 85.9 595 24.4
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 2.8e-14 84.3 109 37.6
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 3.1e-13 80.9 110 39.1
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 6.9e-13 79.7 98 42.9
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.5e-12 78.6 509 25.5
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 8.5e-11 72.8 69 63.8
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 3.6e-09 67.4 49 57.1
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 4.7e-09 67.0 97 40.2
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 1.4e-08 65.5 178 30.3
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 3.0e-08 64.3 109 34.9
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 5.1e-08 63.5 41 65.9
Lj1g0006253 Lotus japonicus HOM05D004938 ORTHO05D006035 2.0e-07 61.6 127 33.9
Glyma.01G239700 Glycine max HOM05D004938 ORTHO05D006035 2.6e-07 61.2 127 34.6
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 5.7e-07 60.1 123 33.3
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 5.7e-07 60.1 123 33.3
Sp6g25140 Schrenkiella parvula HOM05D004938 ORTHO05D006035 5.7e-07 60.1 147 32.7
Manes.15G025800 Manihot esculenta HOM05D004938 ORTHO05D006035 7.4e-07 59.7 145 30.3
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 9.7e-07 59.3 125 32.8
SGA_v2.0_scaffold10G05111 Striga asiatica HOM05D004938 ORTHO05D006035 9.7e-07 59.3 154 32.5
Thhalv10013082m.g Eutrema salsugineum HOM05D004938 ORTHO05D006035 1.3e-06 58.9 147 33.3
Psat4g211200 Pisum sativum HOM05D004938 ORTHO05D006035 1.3e-06 58.9 149 31.5
AT5G19280 Arabidopsis thaliana HOM05D004938 ORTHO05D006035 1.7e-06 58.5 147 32.7
Migut.N00168 Erythranthe guttata HOM05D004938 ORTHO05D006035 1.7e-06 58.5 123 34.1
AL6G30760 Arabidopsis lyrata HOM05D004938 ORTHO05D006035 2.2e-06 58.2 147 32.0
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 3.7e-06 57.4 114 38.6
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 3.7e-06 57.4 120 31.7
Ca_24383_v3 Cicer arietinum L. HOM05D004938 ORTHO05D006035 4.8e-06 57.0 149 31.5
Potri.010G091500 Populus trichocarpa HOM05D004938 ORTHO05D006035 4.8e-06 57.0 117 29.9
Sabra10G0051800 Salix brachista HOM05D004938 ORTHO05D006035 4.8e-06 57.0 112 33.9
VMungo1215G0596 Vigna mungo HOM05D004938 ORTHO05D006035 4.8e-06 57.0 147 30.6
MD13G1186700 Malus domestica HOM05D004938 ORTHO05D006035 6.3e-06 56.6 145 30.3
MD16G1187600 Malus domestica HOM05D004938 ORTHO05D006035 6.3e-06 56.6 145 29.7
Phvul.002G047600 Phaseolus vulgaris HOM05D004938 ORTHO05D006035 6.3e-06 56.6 147 30.6
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 6.3e-06 56.6 48 54.2


User provided reference genes

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