Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g01190 Schrenkiella parvula HOM05D012214 ORTHO05D001736 4.8e-163 578.2 385 100.0
A05p44960 Brassica napus HOM05D012214 ORTHO05D001736 1.6e-118 430.3 391 74.4
BraSC197t45807Z Brassica rapa HOM05D012214 ORTHO05D001736 1.6e-118 430.3 391 74.4
BcaC05g30326 Brassica carinata HOM05D012214 ORTHO05D001736 1.1e-114 417.5 389 71.2
AT3G02125 Arabidopsis thaliana HOM05D012214 ORTHO05D001736 1.2e-108 397.5 386 63.2
BcaC05g30391 Brassica carinata HOM05D012214 ORTHO05D001736 7.0e-106 388.3 393 70.7
C09p75530 Brassica napus HOM05D012214 ORTHO05D001736 7.0e-106 388.3 393 70.7
BolC5t35106H Brassica oleracea HOM05D012214 ORTHO05D001736 4.6e-105 385.6 393 70.5
Thhalv10022338m.g Eutrema salsugineum HOM05D012214 ORTHO05D001736 3.3e-103 379.4 390 63.8
CARHR076090 Cardamine hirsuta HOM05D012214 ORTHO05D001736 1.3e-99 367.5 391 62.1
AL3G11360 Arabidopsis lyrata HOM05D012214 ORTHO05D001736 3.9e-80 302.8 340 61.5
Carub.0003s0124 Capsella rubella HOM05D012214 ORTHO05D001736 6.4e-75 285.4 392 51.3
THA.LOC104803131 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 2.7e-17 94.0 121 52.1
THA.LOC104821167 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 3.3e-15 87.0 291 49.8
Thhalv10015236m.g Eutrema salsugineum HOM05D034527 ORTHO05D031391 1.3e-14 85.1 119 46.2
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 5.3e-13 79.7 123 42.3
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 1.2e-12 78.6 106 49.1
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 3.5e-12 77.0 317 37.9
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 7.7e-12 75.9 81 53.1
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 1.3e-11 75.1 84 52.4
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 1.7e-11 74.7 317 25.9
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 2.9e-11 73.9 93 49.5
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.9e-11 73.9 81 51.9
Ciclev10012704m.g Citrus clementina HOM05D003787 ORTHO05D001736 5.0e-11 73.2 105 44.8
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 6.5e-11 72.8 118 42.4
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 6.5e-11 72.8 209 33.5
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 1.5e-10 71.6 132 40.9
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.9e-10 71.2 84 53.6
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 1.9e-10 71.2 70 54.3
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 2.5e-10 70.9 118 39.8
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 3.2e-10 70.5 84 53.6
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 4.2e-10 70.1 70 54.3
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 5.5e-10 69.7 72 51.4
Nitab4.5_0001637g0040 Nicotiana tabacum HOM05D003787 ORTHO05D001736 5.5e-10 69.7 86 47.7
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 7.2e-10 69.3 66 56.1
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 9.4e-10 68.9 96 45.8
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 9.4e-10 68.9 61 57.4
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 9.4e-10 68.9 61 57.4
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 2.1e-09 67.8 134 41.8
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 2.1e-09 67.8 121 44.6
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 2.7e-09 67.4 166 36.1
Nitab4.5_0002960g0050 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.7e-09 67.4 86 46.5
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 2.7e-09 67.4 102 44.1
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 3.6e-09 67.0 62 56.5
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 3.6e-09 67.0 142 36.6
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 3.6e-09 67.0 74 50.0
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 3.6e-09 67.0 70 57.1
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 4.7e-09 66.6 41 75.6
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 4.7e-09 66.6 166 36.1
Lalb_Chr02g0158901 Lupinus albus HOM05D003787 ORTHO05D001736 8.0e-09 65.9 117 41.0
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 8.0e-09 65.9 45 66.7
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 1.8e-08 64.7 96 46.9
Medtr6g015240 Medicago truncatula HOM05D003787 ORTHO05D001736 1.8e-08 64.7 148 35.1
TPR.G10000 Trifolium pratense HOM05D003787 ORTHO05D001736 1.8e-08 64.7 64 50.0
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 2.3e-08 64.3 136 41.9
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 2.3e-08 64.3 92 43.5
unitig_899.g15099 Utricularia gibba HOM05D003787 ORTHO05D001736 2.3e-08 64.3 92 44.6
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 3.0e-08 63.9 40 75.0
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 3.0e-08 63.9 109 43.1
CAN.G83.4 Capsicum annuum HOM05D003787 ORTHO05D001736 4.0e-08 63.5 66 57.6
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 4.0e-08 63.5 67 55.2
MSTRG.23883 Avicennia marina HOM05D003787 ORTHO05D001736 5.2e-08 63.2 96 42.7
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 5.2e-08 63.2 125 34.4
Psat1g068800 Pisum sativum HOM05D003787 ORTHO05D001736 5.2e-08 63.2 128 35.2
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 5.2e-08 63.2 122 38.5
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 6.8e-08 62.8 72 50.0
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 6.8e-08 62.8 72 50.0
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 6.8e-08 62.8 87 44.8
Gohir.A05G372300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 8.8e-08 62.4 72 50.0
Gorai.007G082600 Gossypium raimondii HOM05D003787 ORTHO05D001736 8.8e-08 62.4 151 37.7
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 1.2e-07 62.0 57 59.6
Gohir.D11G076900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.2e-07 62.0 150 37.3
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 1.5e-07 61.6 160 36.9
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 2.0e-07 61.2 376 27.9
CiPaw.04G055500 Carya illinoinensis HOM05D003787 ORTHO05D001736 2.0e-07 61.2 71 50.7
Gohir.A11G072600 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.0e-07 61.2 128 39.1
arahy.Tifrunner.gnm1.ann1.1H4V42 Arachis hypogaea HOM05D003787 ORTHO05D001736 2.6e-07 60.8 69 52.2
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 2.6e-07 60.8 93 46.2
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 2.6e-07 60.8 96 40.6
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 3.4e-07 60.5 305 25.2
AT5G39200 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 4.4e-07 60.1 62 50.0
Carub.0007s3672 Capsella rubella HOM05D011849 ORTHO05D001736 4.4e-07 60.1 62 48.4
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 4.4e-07 60.1 98 43.9
SalBow1G2532 Salvia bowleyana HOM05D003787 ORTHO05D001736 4.4e-07 60.1 72 50.0
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 5.7e-07 59.7 52 61.5
Peaxi162Scf00451g00113 Petunia axillaris HOM05D003787 ORTHO05D001736 5.7e-07 59.7 120 40.8
SHI06685 Sapria himalayana HOM05D003787 ORTHO05D001736 5.7e-07 59.7 68 52.9
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 5.7e-07 59.7 282 35.1
AL6G26420 Arabidopsis lyrata HOM05D034527 ORTHO05D031391 7.5e-07 59.3 109 42.2
AL7G51260 Arabidopsis lyrata HOM05D011849 ORTHO05D001736 7.5e-07 59.3 62 48.4
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 7.5e-07 59.3 98 43.9
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 1.3e-06 58.5 44 70.5
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 1.3e-06 58.5 106 41.5
Lalb_Chr06g0174951 Lupinus albus HOM05D003787 ORTHO05D001736 1.7e-06 58.2 119 39.5
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.7e-06 58.2 43 67.4
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 2.2e-06 57.8 48 62.5
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 2.2e-06 57.8 48 62.5
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 2.2e-06 57.8 113 41.6
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 2.8e-06 57.4 42 71.4
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 3.7e-06 57.0 79 46.8
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 3.7e-06 57.0 64 53.1
FvH4_6g46831 Fragaria vesca HOM05D003787 ORTHO05D001736 3.7e-06 57.0 41 61.0
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 3.7e-06 57.0 99 39.4
unitig_32.g11770 Utricularia gibba HOM05D003787 ORTHO05D001736 3.7e-06 57.0 40 75.0
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 4.8e-06 56.6 90 42.2
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 4.8e-06 56.6 100 40.0
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 4.8e-06 56.6 162 35.2
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 6.3e-06 56.2 127 40.2
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 6.3e-06 56.2 169 35.5


User provided reference genes

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