Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 4.8e-21 103.6 54 100.0
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 4.8e-21 103.6 54 100.0
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 1.1e-20 102.4 54 98.1
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.4e-20 102.1 54 96.3
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 1.4e-20 102.1 54 98.1
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 3.1e-20 100.9 54 96.3
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 3.1e-20 100.9 54 96.3
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 3.1e-20 100.9 54 96.3
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 3.1e-20 100.9 54 96.3
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 4.1e-20 100.5 54 96.3
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 9.1e-20 99.4 54 96.3
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 1.2e-19 99.0 54 90.7
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 2.7e-19 97.8 54 94.4
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 2.9e-18 94.4 58 89.7
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 5.0e-18 93.6 51 96.1
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 2.1e-16 88.2 54 87.0
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 8.9e-15 82.8 54 79.6
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 1.2e-14 82.4 54 77.8
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 1.2e-14 82.4 54 77.8
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.5e-14 82.0 54 77.8
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 1.5e-14 82.0 54 77.8
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.5e-14 82.0 54 77.8
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.5e-14 82.0 54 77.8
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 77.8
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 2.6e-14 81.3 54 77.8
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 3.4e-14 80.9 54 77.8
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 3.4e-14 80.9 54 77.8
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 3.4e-14 80.9 54 75.9
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 3.4e-14 80.9 54 75.9
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.4e-14 80.9 54 77.8
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 3.4e-14 80.9 54 77.8
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 4.4e-14 80.5 54 74.1
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 4.4e-14 80.5 54 74.1
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 4.4e-14 80.5 54 77.8
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 4.4e-14 80.5 54 77.8
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 4.4e-14 80.5 54 75.9
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 5.7e-14 80.1 54 77.8
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 9.8e-14 79.3 54 74.1
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 9.8e-14 79.3 54 75.9
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 1.3e-13 79.0 54 75.9
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.3e-13 79.0 54 75.9
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 1.3e-13 79.0 54 74.1
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 75.9
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 75.9
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 75.9
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 1.7e-13 78.6 54 74.1
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 2.2e-13 78.2 54 74.1
THA.LOC104805479 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 2.2e-13 78.2 54 75.9
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 2.8e-13 77.8 54 72.2
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 2.8e-13 77.8 54 75.9
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 2.8e-13 77.8 54 74.1
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 2.8e-13 77.8 54 74.1
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 2.8e-13 77.8 54 74.1
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 3.7e-13 77.4 54 74.1
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.7e-13 77.4 54 74.1
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 3.7e-13 77.4 54 75.9
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 74.1
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 74.1
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 74.1
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 75.9
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 6.3e-13 76.6 54 74.1
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 6.3e-13 76.6 54 72.2
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 6.3e-13 76.6 54 72.2
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 6.3e-13 76.6 54 72.2
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 6.3e-13 76.6 54 74.1
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 8.3e-13 76.3 54 74.1
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 8.3e-13 76.3 54 72.2
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 8.3e-13 76.3 54 74.1
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 8.3e-13 76.3 54 74.1
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 8.3e-13 76.3 54 72.2
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 8.3e-13 76.3 54 72.2
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 1.4e-12 75.5 54 74.1
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.4e-12 75.5 56 75.0
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.4e-12 75.5 54 74.1
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 1.4e-12 75.5 54 70.4
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 1.8e-12 75.1 54 70.4
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 1.8e-12 75.1 54 72.2
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 1.8e-12 75.1 52 73.1
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 2.4e-12 74.7 54 72.2
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 3.2e-12 74.3 67 62.7
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 4.1e-12 73.9 39 94.9
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 4.1e-12 73.9 54 72.2
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 4.1e-12 73.9 54 72.2
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 4.1e-12 73.9 54 72.2
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 9.2e-12 72.8 38 94.7
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 9.2e-12 72.8 40 90.0
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 9.2e-12 72.8 56 71.4
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 9.2e-12 72.8 54 72.2
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 9.2e-12 72.8 54 72.2
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.2e-11 72.4 54 74.1
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 1.6e-11 72.0 54 70.4
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.6e-11 72.0 52 69.2
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 2.7e-11 71.2 51 72.5
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 3.5e-11 70.9 54 72.2
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 5.9e-11 70.1 53 66.0
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 5.9e-11 70.1 54 70.4
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 7.8e-11 69.7 54 70.4
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.3e-10 68.9 54 66.7
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 2.3e-10 68.2 54 68.5
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 2.3e-10 68.2 54 68.5
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 2.3e-10 68.2 54 68.5
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 2.3e-10 68.2 54 68.5
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 2.3e-10 68.2 54 68.5
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 2.9e-10 67.8 54 68.5
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 5.0e-10 67.0 46 71.7
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 5.0e-10 67.0 54 63.0
Hund06293 Selenicereus undatus HOM05D004818 ORTHO05D005444 5.0e-10 67.0 50 70.0
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 8.6e-10 66.2 58 65.5
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 8.6e-10 66.2 48 72.9
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 1.9e-09 65.1 40 80.0
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 2.5e-09 64.7 50 66.0
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 2.5e-09 64.7 54 63.0
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 3.3e-09 64.3 40 77.5
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 4.3e-09 63.9 40 80.0
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 5.6e-09 63.5 77 51.9
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 7.3e-09 63.2 51 68.6
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 7.3e-09 63.2 48 68.8
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 7.3e-09 63.2 40 75.0
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 9.5e-09 62.8 43 69.8
Glyma.09G222500 Glycine max HOM05D004818 ORTHO05D005444 9.5e-09 62.8 78 50.0
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 9.5e-09 62.8 39 76.9
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 1.6e-08 62.0 45 68.9
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 1.6e-08 62.0 50 60.0
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 1.6e-08 62.0 50 60.0
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 2.1e-08 61.6 54 66.7
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 3.6e-08 60.8 47 63.8
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 3.6e-08 60.8 47 63.8
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 3.6e-08 60.8 47 63.8
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 3.6e-08 60.8 47 63.8
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.6e-08 60.8 50 62.0
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 3.6e-08 60.8 45 68.9
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 4.7e-08 60.5 40 75.0
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 6.1e-08 60.1 38 76.3
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 1.4e-07 58.9 38 76.3
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 1.4e-07 58.9 39 74.4
Hund00181 Selenicereus undatus HOM05D004818 ORTHO05D005444 1.8e-07 58.5 49 61.2
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 3.1e-07 57.8 43 67.4
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 4.0e-07 57.4 44 63.6
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 4.0e-07 57.4 50 62.0
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 6.8e-07 56.6 38 71.1
Peaxi162Scf00538g00229 Petunia axillaris HOM05D004818 ORTHO05D005444 6.8e-07 56.6 47 61.7
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 8.9e-07 56.2 40 70.0
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 8.9e-07 56.2 50 62.0
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 1.2e-06 55.8 38 73.7
Os04g0117100 Oryza sativa ssp. japonica HOM05D004818 ORTHO05D005444 1.2e-06 55.8 50 64.0
SalBow6G3605 Salvia bowleyana HOM05D004818 ORTHO05D005444 1.5e-06 55.5 39 66.7
Hma1.2p1_0066F.1_g035670 Hydrangea macrophylla HOM05D004818 ORTHO05D005444 2.0e-06 55.1 49 57.1
SMO358G0321 Selaginella moellendorffii HOM05D004818 ORTHO05D005444 2.0e-06 55.1 52 57.7
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 2.6e-06 54.7 35 77.1
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 2.6e-06 54.7 38 73.7
AL3G42600 Arabidopsis lyrata HOM05D021271 ORTHO05D005444 3.4e-06 54.3 33 84.8
AL1G54010 Arabidopsis lyrata HOM05D021271 ORTHO05D019714 7.5e-06 53.1 32 87.5
AUR62010366 Chenopodium quinoa HOM05D004818 ORTHO05D005444 9.8e-06 52.8 39 74.4


User provided reference genes

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