Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 6.5e-307 1057.0 707 100.0
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 8.4e-206 721.1 720 73.5
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 1.1e-205 720.7 725 73.4
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 9.6e-202 707.6 734 71.3
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 2.5e-189 666.4 707 72.0
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 5.5e-189 665.2 738 64.8
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 5.7e-186 655.2 748 65.9
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 6.3e-185 651.7 710 69.3
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 1.2e-183 647.5 719 68.6
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 3.8e-182 642.5 713 69.7
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 2.4e-176 623.2 740 67.7
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 7.9e-172 608.2 753 66.3
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 2.2e-169 600.1 692 68.2
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 1.7e-161 573.9 724 62.6
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 8.6e-134 481.9 718 50.1
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 3.3e-133 479.9 719 50.1
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 5.6e-133 479.2 719 49.1
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 9.5e-133 478.4 721 49.1
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 2.1e-132 477.2 720 50.0
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 1.4e-131 474.6 757 45.7
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 7.5e-130 468.8 719 49.7
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 7.5e-130 468.8 719 49.7
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 8.3e-129 465.3 710 53.8
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.2e-127 461.5 709 47.5
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.6e-127 461.1 701 55.3
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 2.0e-127 460.7 746 49.1
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 3.5e-127 459.9 695 47.2
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 6.0e-127 459.1 716 45.5
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.0e-126 458.4 764 48.6
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.0e-126 458.4 708 44.4
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.1e-125 454.9 701 46.5
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 4.3e-125 453.0 742 49.2
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 4.7e-124 449.5 641 48.0
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 6.2e-124 449.1 740 50.1
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 6.2e-124 449.1 719 51.5
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 1.1e-123 448.4 700 53.1
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 2.3e-123 447.2 715 48.8
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 3.1e-123 446.8 750 48.5
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 6.8e-123 445.7 722 47.0
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 1.2e-122 444.9 728 51.4
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 1.2e-122 444.9 685 49.9
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.5e-122 444.5 699 46.9
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 1.5e-122 444.5 721 48.4
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 1.5e-122 444.5 713 46.0
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 2.6e-122 443.7 723 53.8
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 4.4e-122 443.0 719 47.4
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 7.5e-122 442.2 726 45.5
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 7.5e-122 442.2 755 48.9
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 2.9e-121 440.3 737 50.5
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 3.7e-121 439.9 700 53.6
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 4.9e-121 439.5 649 54.9
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 1.4e-120 438.0 745 49.9
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.9e-120 437.6 739 48.7
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 2.4e-120 437.2 730 46.6
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 3.2e-120 436.8 746 51.1
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 9.2e-120 435.3 697 48.6
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 2.1e-119 434.1 741 51.3
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 4.6e-119 433.0 721 46.5
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 6.0e-119 432.6 697 49.8
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 3.0e-118 430.3 745 50.3
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 8.6e-118 428.7 724 48.9
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 7.3e-117 425.6 733 48.2
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 2.8e-116 423.7 741 50.2
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 1.1e-115 421.8 656 50.8
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.4e-115 421.4 685 50.2
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 6.8e-115 419.1 736 49.7
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 8.9e-115 418.7 745 46.4
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 1.2e-114 418.3 700 50.3
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.5e-114 417.9 739 48.3
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.6e-114 417.2 748 49.5
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 9.9e-114 415.2 721 47.7
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 4.9e-113 412.9 746 50.1
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 6.4e-113 412.5 701 51.2
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 2.4e-112 410.6 526 49.4
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 5.4e-112 409.5 739 47.6
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 3.5e-111 406.8 714 46.8
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 2.5e-109 400.6 743 46.7
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 1.1e-107 395.2 749 48.2
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.8e-107 394.4 700 45.3
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 8.9e-107 392.1 764 44.1
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 5.8e-106 389.4 751 46.2
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 7.6e-106 389.0 731 43.5
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 3.8e-105 386.7 540 46.1
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 8.4e-105 385.6 760 43.2
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 2.4e-104 384.0 793 43.5
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.4e-104 384.0 540 51.7
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 6.0e-103 379.4 530 48.7
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 6.6e-102 375.9 706 46.0
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 1.2e-98 365.2 308 60.4
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.7e-97 361.3 518 44.0
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 4.9e-97 359.8 775 43.5
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 5.4e-96 356.3 587 46.0
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 5.1e-94 349.7 547 44.2
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 8.7e-94 349.0 515 52.8
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 2.5e-93 347.4 703 44.1
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.9e-88 331.3 641 40.4
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.1e-85 322.0 636 38.5
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 9.6e-85 318.9 651 40.9
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.6e-82 310.8 403 53.8
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 2.2e-81 307.8 717 39.9
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.5e-80 303.1 756 37.0
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.6e-79 301.6 433 50.3
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 7.6e-74 282.7 519 42.2
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 2.5e-72 277.7 748 40.6
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 3.9e-70 270.4 203 71.4
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.1e-69 268.9 751 33.8
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 3.2e-64 250.8 574 37.5
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 7.2e-64 249.6 196 64.8
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 6.7e-62 243.0 368 52.4
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.2e-58 232.3 467 43.3
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 5.0e-57 226.9 358 50.8
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 2.5e-56 224.6 832 32.8
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 2.4e-51 208.0 203 52.7
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.4e-43 181.4 301 42.9
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 3.1e-43 181.0 463 35.0
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 2.2e-41 174.9 350 36.9
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 5.0e-41 173.7 701 30.5
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 1.6e-39 168.7 225 44.4
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 3.1e-35 154.5 117 70.9
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 3.5e-34 151.0 234 39.7
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.1e-31 141.7 522 27.8
BraA03t12436Z Brassica rapa HOM05D004723 ORTHO05D019910 6.3e-28 130.2 123 67.5
BcaC01g04505 Brassica carinata HOM05D004723 ORTHO05D019910 9.1e-27 126.3 123 65.9
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 2.0e-26 125.2 289 40.5
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 1.8e-22 112.1 142 49.3
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 4.0e-22 110.9 257 43.2
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 5.7e-21 107.1 189 40.7
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 7.5e-21 106.7 99 50.5
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 9.8e-21 106.3 271 32.8
C03p39780 Brassica napus HOM05D004723 ORTHO05D019910 3.2e-19 101.3 117 60.7
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 7.0e-19 100.1 60 85.0
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 9.2e-19 99.8 82 57.3
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 2.0e-18 98.6 83 71.1
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 2.0e-18 98.6 82 56.1
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.3e-17 95.9 243 36.6
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.9e-17 94.7 141 41.8
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 8.6e-17 93.2 83 68.7
A03p32680 Brassica napus HOM05D004723 ORTHO05D019910 5.6e-16 90.5 104 58.7
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 3.1e-14 84.7 231 36.4
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 8.9e-14 83.2 91 51.6
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 2.2e-12 78.6 255 41.2
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 1.2e-10 72.8 80 47.5
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 3.5e-10 71.2 69 58.0
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 6.0e-10 70.5 116 42.2
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.7e-09 68.9 102 43.1
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 3.0e-09 68.2 206 28.2
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 6.6e-09 67.0 111 44.1
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 8.6e-09 66.6 175 32.0
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 4.3e-08 64.3 48 58.3
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 1.1e-06 59.7 67 40.3
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 5.2e-06 57.4 63 50.8
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 6.8e-06 57.0 61 41.0


User provided reference genes

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