Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.5e-214 749.2 378 100.0
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.4e-186 656.4 377 90.5
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 1.7e-173 612.8 378 85.4
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 5.0e-173 611.3 378 85.2
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.1e-172 610.1 378 85.4
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.9e-172 609.4 378 84.9
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.2e-171 606.7 379 83.4
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.1e-171 605.9 374 85.0
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.1e-171 605.9 384 84.9
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.1e-171 605.9 384 84.9
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.0e-170 603.6 385 84.9
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.0e-170 603.6 385 84.9
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 4.0e-170 601.7 384 84.4
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.2e-169 600.1 385 84.4
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 2.0e-169 599.4 368 85.3
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-167 593.2 377 83.0
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.4e-167 593.2 376 83.0
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 7.0e-167 590.9 375 83.7
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 4.7e-147 525.0 388 72.4
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 7.8e-126 454.5 370 65.9
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 7.8e-126 454.5 372 62.9
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.3e-125 453.8 375 63.7
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 6.6e-125 451.4 377 63.1
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 5.6e-124 448.4 369 64.5
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 2.8e-123 446.0 365 65.8
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.6e-123 445.7 377 62.3
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 8.1e-123 444.5 384 60.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.4e-122 443.7 375 62.4
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.8e-122 443.4 379 61.5
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 5.3e-122 441.8 380 62.4
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 5.3e-122 441.8 357 63.9
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 9.0e-122 441.0 397 60.2
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 3.4e-121 439.1 385 61.6
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 4.5e-121 438.7 372 61.0
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 5.8e-121 438.3 367 63.2
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 7.6e-121 438.0 372 61.0
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.7e-120 436.8 389 61.2
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 2.2e-120 436.4 368 62.0
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.2e-120 436.4 394 60.9
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 2.2e-120 436.4 357 63.9
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 2.9e-120 436.0 373 63.3
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 8.4e-120 434.5 383 61.1
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.1e-119 434.1 357 63.0
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 1.9e-119 433.3 386 60.6
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.4e-119 433.0 370 61.6
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 2.4e-119 433.0 373 62.2
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 3.2e-119 432.6 409 57.7
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 4.2e-119 432.2 373 61.4
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 7.1e-119 431.4 251 88.0
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.6e-118 430.3 384 61.2
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 4.6e-118 428.7 391 60.9
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 7.9e-118 427.9 362 62.4
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.8e-117 426.8 381 60.9
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 6.7e-117 424.9 373 60.9
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.1e-116 424.1 355 60.6
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.5e-116 423.7 359 62.7
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.5e-116 422.9 359 61.0
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.5e-116 422.9 361 61.5
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 4.3e-116 422.2 368 62.0
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 4.3e-116 422.2 379 59.9
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 5.6e-116 421.8 376 60.9
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 5.6e-116 421.8 376 61.4
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 7.4e-116 421.4 371 60.9
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 9.6e-116 421.0 377 59.9
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 9.6e-116 421.0 382 59.7
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 9.6e-116 421.0 416 56.7
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.6e-115 420.2 358 61.5
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.1e-115 419.9 387 57.1
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 2.1e-115 419.9 357 62.5
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 3.6e-115 419.1 380 58.4
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 3.6e-115 419.1 398 57.8
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.6e-115 419.1 361 61.5
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.6e-115 419.1 361 61.5
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 3.6e-115 419.1 389 58.1
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 8.1e-115 417.9 355 61.4
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 8.1e-115 417.9 381 60.6
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-114 417.5 386 58.3
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.4e-114 417.2 385 58.7
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.8e-114 416.8 386 58.5
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.8e-114 416.8 370 60.5
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.4e-114 416.4 367 61.3
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 4.0e-114 415.6 356 60.1
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 6.9e-114 414.8 387 56.6
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 6.9e-114 414.8 378 58.7
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 6.9e-114 414.8 409 56.5
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 6.9e-114 414.8 382 58.4
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-113 414.1 384 59.1
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.5e-113 413.7 392 57.1
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 4.5e-113 412.1 367 61.0
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.5e-113 412.1 388 57.7
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 4.5e-113 412.1 389 59.1
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.3e-112 410.6 387 56.6
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.3e-112 410.6 368 59.2
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 1.3e-112 410.6 379 58.8
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 2.2e-112 409.8 371 59.0
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 2.2e-112 409.8 396 55.8
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.8e-112 409.1 386 57.3
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 3.8e-112 409.1 378 58.5
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.1e-111 407.5 373 59.8
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.9e-111 406.8 365 57.8
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.4e-111 406.4 388 58.5
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 3.2e-111 406.0 391 57.0
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 9.3e-111 404.4 361 58.2
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 9.3e-111 404.4 390 57.4
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.2e-110 404.1 373 59.0
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.6e-110 403.7 386 56.2
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 2.1e-110 403.3 311 65.3
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 3.5e-110 402.5 372 57.5
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.0e-109 401.0 287 69.3
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.3e-109 400.6 371 58.2
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 5.1e-109 398.7 287 69.0
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 6.7e-109 398.3 407 55.0
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.6e-107 393.7 380 56.8
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 2.1e-107 393.3 381 56.2
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 2.1e-107 393.3 393 53.7
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.8e-106 390.2 339 59.6
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.8e-106 390.2 350 58.3
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 6.9e-106 388.3 395 54.7
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.5e-105 387.1 361 58.2
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 2.6e-105 386.3 287 66.2
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.3e-104 384.0 374 56.4
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 4.9e-104 382.1 365 55.9
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 4.2e-103 379.0 373 55.2
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 7.1e-103 378.3 287 68.6
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 4.6e-102 375.6 366 55.7
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 6.0e-102 375.2 375 56.3
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 5.1e-101 372.1 353 50.7
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 5.7e-100 368.6 336 59.2
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 6.9e-98 361.7 365 55.6
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.5e-95 353.2 343 56.6
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 7.2e-95 351.7 290 56.9
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 6.7e-93 345.1 497 43.7
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 3.3e-92 342.8 370 50.3
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 5.3e-90 335.5 355 54.4
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 2.2e-88 330.1 386 46.6
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.2e-87 325.9 280 61.4
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 6.3e-83 312.0 287 58.2
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.5e-81 307.4 171 90.6
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 3.4e-81 306.2 333 49.8
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 2.1e-78 297.0 158 93.0
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.2e-65 254.6 183 71.6
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 6.1e-54 215.7 291 39.2
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 8.0e-54 215.3 295 40.3
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 8.3e-51 205.3 202 58.4
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 2.3e-37 160.6 252 40.1
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.5e-31 141.4 130 62.3
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 5.4e-26 122.9 275 34.2
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 4.4e-20 103.2 117 51.3
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 9.9e-20 102.1 64 79.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 6.4e-19 99.4 173 38.7
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 5.4e-18 96.3 72 59.7
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 9.2e-18 95.5 286 27.3
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 5.8e-12 76.3 126 39.7


User provided reference genes

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