Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 2215.7 1169 100.0
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 2180.6 1177 98.0
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 2177.9 1173 98.2
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 2176.0 1177 97.7
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 2174.8 1170 97.8
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 2165.2 1188 96.5
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 2156.7 1169 97.0
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 2154.4 1171 97.0
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 2154.4 1171 97.0
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 2150.9 1169 96.8
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 2148.2 1171 97.0
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 2101.6 1097 97.3
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 2084.7 1170 93.8
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1938.7 1167 85.9
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1929.1 1164 85.6
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1927.1 1173 86.0
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1925.6 1171 85.7
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1925.2 1166 86.0
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1925.2 1174 86.1
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1922.1 1167 85.6
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1922.1 1167 85.3
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1919.4 1167 85.9
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1919.4 1165 83.8
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1918.7 1166 84.7
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1167 85.6
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1167 84.9
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1173 85.9
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1917.1 1165 85.0
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1916.7 1169 84.9
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1916.0 1167 83.1
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1915.6 1165 83.8
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1911.7 1167 85.2
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1911.3 1165 83.0
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1910.6 1175 85.5
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1909.8 1165 83.9
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1909.4 1170 85.6
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1163 85.0
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1167 85.2
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1906.0 1171 84.5
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1903.3 1172 85.6
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1902.9 1164 84.2
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1902.9 1172 85.5
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1902.1 1171 84.7
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1901.3 1173 84.1
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1900.9 1172 85.6
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1900.9 1167 84.3
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1899.8 1177 85.1
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1896.7 1164 83.2
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1893.6 1163 83.6
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1891.7 1165 84.0
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1890.2 1165 83.5
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1889.8 1176 84.4
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1887.1 1177 84.3
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1885.9 1164 84.5
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1884.8 1176 82.7
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1883.6 1165 84.1
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1882.8 1168 84.7
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1880.9 1171 83.4
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1880.5 1171 83.1
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1878.2 1177 83.3
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1872.8 1201 82.9
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1869.7 1169 82.5
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1866.3 1091 85.8
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1863.2 1173 82.4
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1863.2 1173 82.4
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1862.4 1173 82.9
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1859.3 1165 82.4
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1859.3 1172 82.3
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1857.8 1202 81.4
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1857.4 1184 82.1
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1854.3 1181 82.1
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1852.4 1170 82.0
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1850.5 1167 82.3
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1842.0 1164 81.4
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1840.5 1172 82.0
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1838.9 1216 78.8
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1837.8 1164 83.3
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1833.5 1165 81.7
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1827.4 1167 82.6
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1825.8 1171 78.8
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1825.1 1167 80.8
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1822.8 1206 79.3
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1812.3 1169 80.6
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1806.6 1166 81.7
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1803.9 1160 81.3
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1799.3 1101 81.7
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1786.2 1173 81.1
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1785.0 1195 80.6
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1746.1 1178 77.6
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1727.2 1325 70.9
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1721.8 1168 74.2
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1716.0 1172 74.3
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1687.9 1051 81.2
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1675.2 1168 74.3
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1630.9 1186 70.7
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1607.8 1154 76.9
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1593.9 1165 69.4
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1582.8 1166 69.6
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1571.2 1002 81.1
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1531.9 941 83.6
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1446.4 848 86.9
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1413.3 1165 63.9
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1399.0 1168 61.5
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1383.6 839 83.3
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1352.0 1164 60.0
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1347.0 1178 60.1
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1336.6 1182 59.3
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1329.3 799 83.9
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1271.1 798 80.3
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1189.1 786 76.0
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1100.9 695 81.6
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 7.9e-310 1067.4 924 58.9
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 3.7e-299 1031.9 1134 47.5
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 4.7e-294 1015.0 625 84.0
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.3e-285 986.1 657 78.2
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 3.7e-283 978.8 577 88.2
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.4e-274 950.3 742 69.1
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 6.5e-272 941.4 547 88.3
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.2e-270 937.2 599 82.3
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 3.3e-263 912.5 589 79.5
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.6e-246 857.1 524 78.8
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 2.5e-215 753.4 465 78.7
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 4.0e-205 719.5 487 80.3
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 8.4e-195 685.3 398 82.9
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 8.0e-153 545.8 358 80.7
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 3.9e-139 500.4 350 79.7
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 3.0e-115 421.0 379 58.6
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 1.1e-104 386.0 279 70.6
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 3.4e-87 327.8 195 82.6
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 2.1e-68 265.4 168 89.3
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 6.5e-46 190.7 144 72.2
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 3.0e-43 181.8 104 95.2
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 1.5e-42 179.5 110 90.0
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.7e-41 176.0 109 88.1
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 4.2e-37 161.4 78 98.7
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 3.1e-32 145.2 87 79.3
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 9.2e-32 143.7 96 79.2
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 2.2e-25 122.5 106 85.8
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.3e-17 96.7 132 42.4
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.7e-17 96.3 132 43.2
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 4.1e-16 91.7 125 48.8
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.4e-10 71.6 51 64.7
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 5.8e-10 71.2 51 64.7
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 4.9e-09 68.2 46 67.4
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 9.2e-08 63.9 183 33.3
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 7.8e-07 60.8 57 56.1


User provided reference genes

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