Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g30690 Schrenkiella parvula HOM05D023070 ORTHO05D023654 5.3e-106 387.9 222 100.0
Carub.0008s2852 Capsella rubella HOM05D023070 ORTHO05D023654 4.0e-53 212.2 225 64.9
AT5G66000 Arabidopsis thaliana HOM05D023070 ORTHO05D023654 1.5e-44 183.7 212 63.2
AL8G45630 Arabidopsis lyrata HOM05D023070 ORTHO05D023654 1.7e-43 180.3 209 62.7
CARHR281760 Cardamine hirsuta HOM05D023070 ORTHO05D023654 4.1e-34 149.1 199 60.8
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.8e-14 83.2 234 32.9
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.8e-14 83.2 234 32.9
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 5.3e-13 79.0 172 39.5
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.4e-10 68.9 175 36.6
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 9.3e-10 68.2 225 36.9
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 9.3e-10 68.2 239 30.5
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 1.6e-09 67.4 145 40.0
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.1e-09 67.0 238 26.9
BcaC03g15301 Brassica carinata HOM05D020457 ORTHO05D021832 2.7e-09 66.6 198 44.9
C02p29120 Brassica napus HOM05D020457 ORTHO05D021832 2.7e-09 66.6 198 44.9
BolC2t08960H Brassica oleracea HOM05D020457 ORTHO05D021832 2.7e-09 66.6 198 44.9
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 3.5e-09 66.2 239 37.2
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 6.0e-09 65.5 255 34.5
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.0e-08 64.7 251 32.3
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.3e-08 64.3 135 37.0
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.3e-08 64.3 127 47.2
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 1.8e-08 63.9 153 34.0
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.3e-08 63.5 102 48.0
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.3e-08 63.5 102 48.0
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 2.3e-08 63.5 239 32.6
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.0e-08 63.2 225 27.1
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 3.0e-08 63.2 256 28.9
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 3.9e-08 62.8 186 34.9
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 3.9e-08 62.8 186 34.9
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 3.9e-08 62.8 244 32.8
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 3.9e-08 62.8 149 33.6
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 3.9e-08 62.8 186 33.9
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 3.9e-08 62.8 253 30.4
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.9e-08 62.8 200 36.5
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.1e-08 62.4 129 47.3
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 6.7e-08 62.0 209 39.2
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 8.7e-08 61.6 210 36.7
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 8.7e-08 61.6 232 34.9
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 8.7e-08 61.6 151 37.1
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.1e-07 61.2 174 36.2
A02p17430 Brassica napus HOM05D020457 ORTHO05D021832 1.1e-07 61.2 205 44.4
BraA02t06788Z Brassica rapa HOM05D020457 ORTHO05D021832 1.1e-07 61.2 205 44.4
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 1.1e-07 61.2 169 39.6
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 1.1e-07 61.2 266 27.4
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.5e-07 60.8 151 37.1
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.9e-07 60.5 102 36.3
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.9e-07 60.5 151 37.1
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 1.9e-07 60.5 158 30.4
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 2.5e-07 60.1 168 36.3
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 2.5e-07 60.1 152 36.8
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.5e-07 60.1 188 28.7
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.3e-07 59.7 216 33.3
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 3.3e-07 59.7 235 29.4
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 4.3e-07 59.3 212 34.0
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 4.3e-07 59.3 223 28.7
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 4.3e-07 59.3 214 29.9
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 5.6e-07 58.9 183 35.0
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 5.6e-07 58.9 168 36.9
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 5.6e-07 58.9 193 33.2
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 5.6e-07 58.9 170 41.8
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 7.4e-07 58.5 183 35.0
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 7.4e-07 58.5 217 35.0
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 1.3e-06 57.8 139 39.6
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.3e-06 57.8 170 41.8
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.6e-06 57.4 171 39.2
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.6e-06 57.4 152 41.4
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.1e-06 57.0 188 36.2
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 2.1e-06 57.0 135 31.9
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 2.1e-06 57.0 152 38.8
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 2.8e-06 56.6 203 28.1
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 2.8e-06 56.6 203 28.1
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.8e-06 56.6 217 33.2
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 2.8e-06 56.6 169 34.9
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 2.8e-06 56.6 174 35.1
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.6e-06 56.2 209 34.4
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 3.6e-06 56.2 153 43.1
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 4.8e-06 55.8 98 41.8
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 6.2e-06 55.5 184 36.4
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 6.2e-06 55.5 147 44.9
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.2e-06 55.5 107 32.7
BcaB05g24679 Brassica carinata HOM05D020457 ORTHO05D021832 8.1e-06 55.1 195 44.6
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 8.1e-06 55.1 152 38.8
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 8.1e-06 55.1 131 32.8


User provided reference genes

Program Settings