Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 9.2e-105 383.6 204 100.0
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 3.6e-93 345.1 202 92.1
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 4.7e-93 344.7 199 93.0
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 4.1e-89 331.6 190 92.6
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 8.6e-87 323.9 189 91.5
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 4.3e-86 321.6 204 87.3
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 7.3e-86 320.9 207 87.0
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 3.1e-84 315.5 202 85.6
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 3.4e-83 312.0 194 88.7
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 3.4e-83 312.0 194 88.7
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 3.4e-83 312.0 194 88.7
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 2.2e-82 309.3 208 82.7
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 6.4e-82 307.8 203 84.2
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 6.4e-82 307.8 203 84.2
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 1.1e-78 297.0 189 85.7
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 4.3e-78 295.0 184 87.5
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 7.3e-78 294.3 193 85.0
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 6.8e-76 287.7 190 81.6
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 2.9e-74 282.3 203 75.9
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 6.0e-72 274.6 157 92.4
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 6.2e-69 264.6 204 70.1
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 4.0e-68 261.9 204 69.6
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 3.4e-67 258.8 188 72.3
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.4e-65 253.4 182 70.9
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 2.4e-65 252.7 204 68.1
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 4.2e-65 251.9 185 71.9
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 9.3e-65 250.8 202 66.8
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.6e-64 250.0 202 65.8
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 1.6e-64 250.0 200 67.0
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 2.7e-64 249.2 201 68.7
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 2.7e-64 249.2 230 62.2
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 6.0e-64 248.1 200 67.0
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 6.0e-64 248.1 191 67.0
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 6.0e-64 248.1 202 66.3
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 1.7e-63 246.5 191 68.6
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.3e-63 246.1 202 65.8
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 3.0e-63 245.7 201 68.2
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 3.9e-63 245.4 203 66.5
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.1e-63 245.0 185 68.1
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 5.1e-63 245.0 192 67.2
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 1.1e-62 243.8 191 68.1
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.5e-62 243.4 188 67.6
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.5e-62 242.7 215 65.6
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 4.3e-62 241.9 199 67.3
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 4.3e-62 241.9 195 67.7
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 4.3e-62 241.9 185 69.2
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 7.4e-62 241.1 199 65.3
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 1.3e-61 240.4 206 65.5
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 2.1e-61 239.6 207 63.8
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 2.1e-61 239.6 204 62.7
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 3.6e-61 238.8 201 65.7
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 3.6e-61 238.8 206 65.0
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 4.8e-61 238.4 200 62.5
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 4.8e-61 238.4 209 63.6
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 6.2e-61 238.0 197 66.5
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 8.1e-61 237.7 184 65.2
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 2.4e-60 236.1 182 68.7
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 2.4e-60 236.1 191 65.4
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.4e-60 236.1 195 65.6
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 3.1e-60 235.7 204 63.7
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 9.0e-60 234.2 203 60.1
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.5e-59 233.4 203 60.1
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.6e-59 232.6 196 62.8
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 4.5e-59 231.9 205 62.0
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 4.5e-59 231.9 190 66.3
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 5.8e-59 231.5 206 61.7
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 5.8e-59 231.5 204 61.3
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 7.6e-59 231.1 198 62.1
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 1.3e-58 230.3 188 66.0
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 1.3e-58 230.3 196 62.8
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.3e-58 230.3 188 64.4
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 2.2e-58 229.6 196 60.2
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 3.8e-58 228.8 205 60.5
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.9e-57 226.5 182 65.4
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 1.9e-57 226.5 182 66.5
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.9e-57 226.5 207 59.9
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.4e-57 226.1 190 65.8
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 9.3e-57 224.2 188 66.0
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 1.6e-56 223.4 192 64.1
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 5.1e-55 218.4 182 65.9
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 5.6e-54 214.9 201 61.7
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.3e-53 213.8 194 61.3
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 2.8e-53 212.6 230 53.9
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.1e-52 210.7 178 64.0
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 3.1e-52 209.1 178 63.5
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 4.0e-52 208.8 199 60.8
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 6.9e-52 208.0 194 62.4
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.2e-51 207.2 192 60.4
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.3e-50 203.8 216 54.2
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 6.5e-50 201.4 185 59.5
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 8.4e-50 201.1 188 59.0
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 1.4e-49 200.3 192 59.9
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 5.5e-49 198.4 167 62.3
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 7.1e-49 198.0 165 61.8
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.2e-48 197.2 184 57.1
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.2e-48 197.2 182 61.0
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.6e-48 196.8 141 68.8
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 3.5e-48 195.7 212 55.7
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.0e-47 194.1 146 70.5
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.3e-47 193.0 146 70.5
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.0e-47 192.6 141 71.6
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 9.6e-46 187.6 195 56.4
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.3e-45 187.2 181 54.7
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 8.2e-45 184.5 117 77.8
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 3.1e-44 182.6 230 50.0
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.5e-43 180.3 130 70.8
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 2.6e-43 179.5 132 70.5
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 4.2e-41 172.2 108 79.6
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 5.5e-41 171.8 153 60.1
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.2e-40 170.6 118 72.0
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.6e-40 170.2 110 71.8
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 1.0e-39 167.5 138 65.9
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 7.4e-38 161.4 189 54.0
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.2e-35 154.1 111 75.7
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.0e-34 151.0 139 61.9
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 3.1e-28 129.4 116 62.9
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 5.3e-28 128.6 125 58.4
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 5.3e-28 128.6 83 77.1
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 6.9e-28 128.3 88 73.9
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 9.1e-28 127.9 145 44.8
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 4.5e-27 125.6 101 58.4
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.0e-26 124.4 180 41.1
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 5.0e-26 122.1 88 70.5
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.0e-23 112.8 185 38.9
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 5.7e-22 108.6 101 55.4
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 7.4e-22 108.2 69 76.8
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 6.3e-21 105.1 122 48.4
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 5.3e-20 102.1 150 44.7
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 2.2e-18 96.7 154 42.2
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 5.0e-18 95.5 110 43.6
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.1e-17 94.4 80 62.5
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 7.2e-17 91.7 59 71.2
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 9.4e-17 91.3 81 54.3
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 6.7e-15 85.1 140 37.1
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 2.6e-14 83.2 63 68.3


User provided reference genes

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