Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 2.1e-123 445.7 217 100.0
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.3e-112 409.8 217 90.8
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 1.4e-111 406.4 217 90.8
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 5.3e-111 404.4 217 89.4
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 8.5e-109 397.1 217 89.4
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 1.6e-107 392.9 217 86.6
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 4.7e-107 391.3 218 87.2
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 7.5e-105 384.0 209 89.0
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 6.3e-104 380.9 218 86.2
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 6.3e-104 380.9 218 86.2
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.4e-103 379.8 217 82.9
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 1.8e-103 379.4 218 86.2
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 4.1e-103 378.3 218 83.9
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 5.4e-103 377.9 219 84.5
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 5.4e-103 377.9 219 84.5
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 7.0e-103 377.5 218 83.9
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 9.1e-103 377.1 218 85.3
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 2.7e-102 375.6 219 82.2
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 7.7e-102 374.0 218 85.3
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.0e-101 373.6 218 81.7
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.3e-101 373.2 220 84.1
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 4.7e-99 364.8 218 79.8
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 4.0e-98 361.7 218 80.3
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.0e-97 359.4 218 80.7
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 2.6e-97 359.0 218 78.4
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 4.4e-97 358.2 207 85.5
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 7.0e-95 350.9 218 78.4
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.0e-93 347.1 220 76.8
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.3e-93 346.7 220 77.3
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 5.0e-93 344.7 218 76.6
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.5e-92 342.4 236 72.0
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 9.5e-92 340.5 220 76.8
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 9.5e-92 340.5 221 76.0
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 9.5e-92 340.5 221 76.0
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.2e-91 340.1 221 76.0
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 2.1e-91 339.3 220 77.3
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 2.1e-91 339.3 220 76.4
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 3.6e-91 338.6 220 76.4
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 6.1e-91 337.8 220 76.4
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.1e-91 337.8 221 75.6
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.0e-90 337.0 222 76.1
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.4e-90 336.7 221 74.2
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.8e-90 336.3 220 75.9
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 2.3e-90 335.9 221 73.8
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 3.0e-90 335.5 221 73.8
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 5.2e-90 334.7 218 74.8
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 8.9e-90 334.0 219 75.3
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 2.0e-89 332.8 220 74.5
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 2.6e-89 332.4 220 75.5
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 2.6e-89 332.4 220 74.5
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 3.4e-89 332.0 220 75.0
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 5.7e-89 331.3 220 74.1
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 7.5e-89 330.9 220 74.5
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 7.5e-89 330.9 220 74.5
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 9.8e-89 330.5 219 74.4
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.3e-88 330.1 220 73.6
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.7e-88 329.7 220 73.6
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.2e-88 329.3 220 76.4
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.2e-88 329.3 192 81.8
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 2.2e-88 329.3 220 73.6
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 2.2e-88 329.3 220 73.6
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 2.2e-88 329.3 220 75.5
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.7e-88 328.6 192 80.7
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 6.4e-88 327.8 219 74.0
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 6.4e-88 327.8 220 73.6
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.1e-87 327.0 219 75.3
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 1.1e-87 327.0 220 73.2
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 9.2e-87 323.9 220 72.7
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.2e-86 323.6 217 71.9
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.6e-86 323.2 220 73.2
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 2.7e-86 322.4 220 71.8
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 3.5e-86 322.0 220 72.7
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 4.6e-86 321.6 226 75.7
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 4.6e-86 321.6 226 75.7
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 5.9e-86 321.2 219 72.6
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 3.9e-85 318.5 220 72.3
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 5.0e-85 318.2 192 80.2
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 5.0e-85 318.2 192 78.1
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 3.3e-84 315.5 221 75.6
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 4.3e-84 315.1 219 71.7
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 7.3e-84 314.3 192 77.6
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 7.3e-84 314.3 195 78.5
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.2e-83 313.5 219 72.6
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.2e-83 313.5 219 72.6
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 2.1e-83 312.8 219 72.1
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 1.8e-82 309.7 220 68.6
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.8e-82 309.7 221 69.2
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 3.1e-82 308.9 229 69.0
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.2e-81 307.0 193 76.2
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.5e-81 306.6 199 77.4
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.4e-81 305.4 196 74.5
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.4e-81 305.1 219 70.3
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 4.4e-81 305.1 221 69.2
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 2.9e-80 302.4 220 68.6
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 4.9e-80 301.6 196 74.5
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 8.3e-80 300.8 220 67.3
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 8.3e-80 300.8 220 67.3
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.1e-79 300.4 194 76.8
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.4e-79 300.1 232 67.2
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 3.2e-79 298.9 220 67.3
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 7.0e-79 297.7 221 67.9
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 9.2e-79 297.4 193 74.1
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.6e-78 296.6 221 67.4
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 4.6e-78 295.0 198 74.7
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.0e-77 293.9 193 75.6
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 3.0e-77 292.4 219 65.3
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 3.3e-76 288.9 195 72.3
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.8e-75 285.8 210 67.1
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 6.2e-75 284.6 300 54.0
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 3.7e-72 275.4 179 75.4
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 3.7e-72 275.4 219 61.2
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 6.0e-70 268.1 218 59.2
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.3e-69 266.9 218 60.6
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.9e-69 265.4 204 66.7
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.1e-68 263.8 289 52.6
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 3.3e-68 262.3 221 63.3
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 4.3e-68 261.9 192 67.7
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 8.9e-66 254.2 213 59.6
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 4.4e-65 251.9 218 60.1
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 2.9e-64 249.2 213 59.2
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 9.2e-63 244.2 226 54.9
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 1.6e-62 243.4 179 70.4
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 4.6e-62 241.9 179 68.2
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.9e-61 238.8 192 61.5
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 5.1e-61 238.4 169 71.6
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 5.6e-60 235.0 163 73.0
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.0e-57 226.5 194 57.7
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 4.4e-57 225.3 221 51.6
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 8.4e-56 221.1 221 49.8
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.0e-53 214.2 169 65.7
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 3.0e-53 212.6 158 69.6
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 5.1e-53 211.8 195 60.0
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 7.4e-44 181.4 218 45.9
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 6.2e-43 178.3 161 57.1
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 6.2e-43 178.3 93 87.1
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 1.1e-42 177.6 189 51.9
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.2e-41 174.1 149 57.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 8.1e-35 151.4 220 35.5
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.7e-32 143.7 228 36.0
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.9e-31 140.2 246 37.8
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.0e-29 134.4 84 75.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 3.9e-29 132.5 217 35.9
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 3.9e-29 132.5 84 70.2
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.6e-25 119.8 100 67.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.8e-21 107.1 140 44.3
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.7e-21 104.8 77 72.7
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.5e-17 94.0 92 53.3
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 2.9e-08 63.2 142 37.3
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.6e-06 57.4 186 21.5


User provided reference genes

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