Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.2e-78 295.8 177 100.0
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-68 263.5 177 88.7
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-68 263.5 177 86.4
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.2e-68 263.5 177 86.4
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.2e-68 263.5 177 88.7
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 2.0e-68 262.7 177 82.5
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 2.0e-68 262.7 177 82.5
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 2.0e-68 262.7 177 82.5
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 3.9e-67 258.5 177 86.4
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 2.5e-66 255.8 177 80.2
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 2.5e-66 255.8 177 80.2
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 6.2e-65 251.1 177 85.3
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 8.0e-65 250.8 177 83.1
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 2.2e-62 242.7 182 83.0
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.6e-60 236.5 182 86.3
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 4.3e-58 228.4 182 83.5
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 2.0e-55 219.5 177 73.4
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 4.4e-55 218.4 177 72.9
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 4.4e-55 218.4 177 72.9
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 5.8e-55 218.0 177 73.4
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.4e-53 213.4 177 72.3
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 1.9e-53 213.0 181 70.2
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 3.1e-48 195.7 177 67.8
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 4.2e-45 185.3 186 75.3
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.3e-25 120.6 186 57.0
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 4.8e-25 118.6 187 44.4
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.0e-23 113.2 124 55.6
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 6.5e-22 108.2 103 53.4
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.7e-20 102.8 185 39.5
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 1.3e-19 100.5 102 55.9
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.3e-19 100.5 177 39.0
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.8e-19 100.1 115 50.4
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 3.0e-19 99.4 117 47.9
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 3.9e-19 99.0 119 47.1
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 3.9e-19 99.0 108 52.8
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 5.1e-19 98.6 119 47.1
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 6.7e-19 98.2 119 45.4
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 6.7e-19 98.2 111 51.4
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 6.7e-19 98.2 182 37.4
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.1e-18 97.4 115 48.7
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 1.1e-18 97.4 109 51.4
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.1e-18 97.4 193 38.3
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 1.5e-18 97.1 121 45.5
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.9e-18 96.7 115 47.0
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.5e-18 96.3 112 52.7
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.3e-18 95.5 122 45.9
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 4.3e-18 95.5 176 39.8
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.4e-18 94.7 103 51.5
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 7.4e-18 94.7 122 47.5
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 9.6e-18 94.4 119 42.9
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.3e-17 94.0 121 46.3
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 1.3e-17 94.0 115 47.8
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 1.6e-17 93.6 121 47.1
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 1.6e-17 93.6 203 34.5
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.1e-17 93.2 102 50.0
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 3.7e-17 92.4 194 38.1
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 3.7e-17 92.4 103 51.5
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.8e-17 92.0 103 50.5
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 4.8e-17 92.0 115 47.8
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 4.8e-17 92.0 115 47.0
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 4.8e-17 92.0 117 44.4
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 6.2e-17 91.7 123 43.1
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 6.2e-17 91.7 120 43.3
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.2e-17 91.7 103 50.5
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.2e-17 91.7 119 43.7
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 6.2e-17 91.7 189 35.4
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.2e-17 91.3 111 51.4
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.2e-17 91.3 111 51.4
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 8.2e-17 91.3 112 49.1
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 8.2e-17 91.3 115 47.0
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.4e-16 90.5 119 46.2
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.4e-16 90.5 187 34.2
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.4e-16 90.5 179 37.4
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.4e-16 90.5 109 47.7
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.4e-16 90.5 109 47.7
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.4e-16 89.7 111 47.7
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 2.4e-16 89.7 118 47.5
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 3.1e-16 89.4 107 44.9
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 4.1e-16 89.0 121 44.6
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 4.1e-16 89.0 117 46.2
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.1e-16 89.0 123 46.3
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.1e-16 89.0 123 46.3
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.3e-16 88.6 120 47.5
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.3e-16 88.6 119 44.5
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 6.9e-16 88.2 119 42.9
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 6.9e-16 88.2 118 49.2
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 9.0e-16 87.8 116 45.7
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.0e-16 87.8 101 49.5
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 1.2e-15 87.4 183 35.0
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.2e-15 87.4 183 35.0
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.5e-15 87.0 121 43.8
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 1.5e-15 87.0 102 48.0
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.5e-15 87.0 102 49.0
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.6e-15 86.3 110 47.3
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 2.6e-15 86.3 119 45.4
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.6e-15 86.3 101 48.5
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 2.6e-15 86.3 129 46.5
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 2.6e-15 86.3 115 47.8
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 3.4e-15 85.9 125 40.0
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 4.5e-15 85.5 116 48.3
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 4.5e-15 85.5 102 42.2
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 4.5e-15 85.5 111 45.9
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 5.8e-15 85.1 102 48.0
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 7.6e-15 84.7 126 43.7
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 7.6e-15 84.7 129 41.1
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.3e-14 84.0 106 47.2
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.3e-14 84.0 108 50.9
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 2.9e-14 82.8 107 47.7
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 2.9e-14 82.8 113 46.9
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 2.9e-14 82.8 117 41.0
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 2.9e-14 82.8 119 42.9
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 3.8e-14 82.4 121 42.1
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 3.8e-14 82.4 110 46.4
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 3.8e-14 82.4 110 46.4
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.8e-14 82.4 102 49.0
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 5.0e-14 82.0 120 40.0
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 5.0e-14 82.0 96 47.9
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 5.0e-14 82.0 100 48.0
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 5.0e-14 82.0 116 42.2
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 6.5e-14 81.6 120 45.0
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 8.4e-14 81.3 103 43.7
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 8.4e-14 81.3 121 45.5
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.1e-13 80.9 199 38.2
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 1.4e-13 80.5 105 42.9
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.9e-13 80.1 108 45.4
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 3.2e-13 79.3 117 41.0
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 3.2e-13 79.3 102 44.1
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 5.5e-13 78.6 101 47.5
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 5.5e-13 78.6 116 42.2
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 7.2e-13 78.2 100 48.0
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 7.2e-13 78.2 121 38.8
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 9.3e-13 77.8 186 32.8
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 9.3e-13 77.8 117 42.7
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 9.3e-13 77.8 114 41.2
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 9.3e-13 77.8 114 41.2
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.6e-12 77.0 108 45.4
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.6e-12 77.0 137 37.2
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 2.1e-12 76.6 94 47.9
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.7e-12 76.3 101 43.6
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 6.1e-12 75.1 95 50.5
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 7.9e-12 74.7 108 41.7
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.3e-11 73.9 101 43.6
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 2.3e-11 73.2 115 41.7
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.5e-10 70.5 49 65.3
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.5e-10 70.5 49 65.3
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.9e-10 70.1 99 42.4
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.5e-10 69.7 72 52.8
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 4.3e-10 68.9 93 44.1
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 4.3e-10 68.9 95 44.2
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 9.7e-10 67.8 99 41.4
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 3.7e-09 65.9 124 37.9
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 3.7e-09 65.9 95 42.1
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 3.1e-08 62.8 89 41.6
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.1e-08 62.4 136 33.8
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.1e-08 62.4 136 33.8
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 5.3e-08 62.0 54 55.6
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 6.9e-08 61.6 101 41.6
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 6.9e-08 61.6 45 71.1
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 6.9e-08 61.6 44 61.4
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 9.0e-08 61.2 91 42.9
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.2e-07 60.8 124 37.9
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 3.4e-07 59.3 50 60.0
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 4.5e-07 58.9 98 38.8
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 3.8e-06 55.8 46 60.9
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.8e-06 55.8 45 60.0
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 3.8e-06 55.8 46 58.7
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 3.8e-06 55.8 46 56.5
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 3.8e-06 55.8 45 60.0
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 8.5e-06 54.7 52 55.8


User provided reference genes

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