Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g28940 Schrenkiella parvula HOM05D006600 ORTHO05D008446 5.0e-161 571.2 327 100.0
Thhalv10005718m.g Eutrema salsugineum HOM05D006600 ORTHO05D008446 3.5e-154 548.5 327 86.2
BolC3t18247H Brassica oleracea HOM05D006600 ORTHO05D008446 3.8e-153 545.0 327 80.1
C03p59830 Brassica napus HOM05D006600 ORTHO05D008446 4.2e-152 541.6 327 79.5
BraA06t26199Z Brassica rapa HOM05D006600 ORTHO05D008446 4.7e-151 538.1 327 79.2
BcaB02g09901 Brassica carinata HOM05D006600 ORTHO05D008446 8.0e-151 537.3 327 78.9
A06p32700 Brassica napus HOM05D006600 ORTHO05D008446 2.3e-150 535.8 327 78.9
AT5G65860 Arabidopsis thaliana HOM05D006600 ORTHO05D008446 5.3e-147 524.6 327 85.9
Carub.0008s2674 Capsella rubella HOM05D006600 ORTHO05D008446 1.5e-144 516.5 327 90.8
CARHR279850 Cardamine hirsuta HOM05D006600 ORTHO05D008446 9.4e-144 513.8 333 88.9
BcaC01g02830 Brassica carinata HOM05D006600 ORTHO05D008446 2.7e-135 485.7 237 93.7
THA.LOC104807092 Tarenaya hassleriana HOM05D006600 ORTHO05D008446 5.5e-128 461.5 324 67.9
Psat5g038240 Pisum sativum HOM05D006600 ORTHO05D008446 5.4e-123 444.9 321 65.1
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 2.0e-122 443.0 311 83.3
CsaV3_2G026260 Cucumis sativus L. HOM05D006600 ORTHO05D008446 1.7e-121 439.9 323 78.0
Thecc.08G092000 Theobroma cacao HOM05D006600 ORTHO05D008446 1.7e-121 439.9 321 70.4
TPR.G33718 Trifolium pratense HOM05D006600 ORTHO05D008446 1.7e-121 439.9 321 65.4
Glyma.06G045000 Glycine max HOM05D006600 ORTHO05D008446 5.0e-121 438.3 325 79.4
Ciclev10001599m.g Citrus clementina HOM05D006600 ORTHO05D008446 6.6e-121 438.0 323 79.9
VMungo1309G2568 Vigna mungo HOM05D006600 ORTHO05D008446 6.6e-121 438.0 325 78.8
QL12p037547 Quercus lobata HOM05D006600 ORTHO05D008446 8.6e-121 437.6 323 64.1
arahy.Tifrunner.gnm1.ann1.UTGV4K Arachis hypogaea HOM05D006600 ORTHO05D008446 1.1e-120 437.2 326 78.8
Prupe.1G425800 Prunus persica HOM05D006600 ORTHO05D008446 1.5e-120 436.8 323 78.6
arahy.Tifrunner.gnm1.ann1.H62KW4 Arachis hypogaea HOM05D006600 ORTHO05D008446 2.5e-120 436.0 326 78.8
Glyma.04G044500 Glycine max HOM05D006600 ORTHO05D008446 2.5e-120 436.0 327 65.1
Lalb_Chr23g0267431 Lupinus albus HOM05D006600 ORTHO05D008446 2.5e-120 436.0 326 78.5
Medtr3g102800 Medicago truncatula HOM05D006600 ORTHO05D008446 2.5e-120 436.0 321 63.9
Phvul.009G070400 Phaseolus vulgaris HOM05D006600 ORTHO05D008446 2.5e-120 436.0 325 79.1
Sabra14G0012400 Salix brachista HOM05D006600 ORTHO05D008446 2.5e-120 436.0 326 63.8
Ah.15g092540 Amaranthus hybridus HOM05D006600 ORTHO05D008446 3.3e-120 435.6 325 63.1
Sed0004073 Sechium edule HOM05D006600 ORTHO05D008446 5.6e-120 434.9 326 77.9
Atru.chr13.803 Acer truncatum HOM05D006600 ORTHO05D008446 7.3e-120 434.5 322 79.8
Gorai.009G217900 Gossypium raimondii HOM05D006600 ORTHO05D008446 1.2e-119 433.7 324 78.1
CiPaw.08G048500 Carya illinoinensis HOM05D006600 ORTHO05D008446 2.1e-119 433.0 319 65.8
PSO541G2868 Papaver somniferum HOM05D006600 ORTHO05D008446 2.1e-119 433.0 326 71.2
ClCG08G016350 Citrullus lanatus HOM05D006600 ORTHO05D008446 2.8e-119 432.6 323 77.4
PSO675G8764 Papaver somniferum HOM05D006600 ORTHO05D008446 2.8e-119 432.6 326 63.8
Rhsim07G0222000 Rhododendron simsii HOM05D006600 ORTHO05D008446 2.8e-119 432.6 323 76.2
Dinv44978 Davidia involucrata HOM05D006600 ORTHO05D008446 6.1e-119 431.4 323 78.9
Lj1g0008642 Lotus japonicus HOM05D006600 ORTHO05D008446 6.1e-119 431.4 327 77.1
Cfa013668 Carpinus fangiana HOM05D006600 ORTHO05D008446 8.0e-119 431.0 323 78.0
Lsat_1_v5_gn_6_112481 Lactuca sativa HOM05D006600 ORTHO05D008446 1.0e-118 430.6 325 79.4
vmacro04585 Vaccinium macrocarpon HOM05D006600 ORTHO05D008446 1.0e-118 430.6 326 78.2
Gohir.A05G207900 Gossypium hirsutum HOM05D006600 ORTHO05D008446 1.8e-118 429.9 324 77.5
Manes.18G044200 Manihot esculenta HOM05D006600 ORTHO05D008446 1.8e-118 429.9 323 63.8
Solyc04g078120.3 Solanum lycopersicum HOM05D006600 ORTHO05D008446 1.8e-118 429.9 323 67.2
Cc10_g05550 Coffea canephora HOM05D006600 ORTHO05D008446 2.3e-118 429.5 326 77.6
Eucgr.F00122 Eucalyptus grandis HOM05D006600 ORTHO05D008446 2.3e-118 429.5 323 79.6
Gohir.D05G211400 Gossypium hirsutum HOM05D006600 ORTHO05D008446 3.1e-118 429.1 324 77.5
TWI56G0382 Tripterygium wilfordii HOM05D006600 ORTHO05D008446 3.1e-118 429.1 317 78.9
Ca_15912_v3 Cicer arietinum L. HOM05D006600 ORTHO05D008446 4.0e-118 428.7 321 75.4
MD08G1088100 Malus domestica HOM05D006600 ORTHO05D008446 5.2e-118 428.3 323 77.7
Sopen04g031730 Solanum pennellii HOM05D006600 ORTHO05D008446 8.9e-118 427.6 323 65.3
CSS0036700 Camellia sinensis var. sinensis HOM05D006600 ORTHO05D008446 1.2e-117 427.2 323 77.4
PGSC0003DMG400021533 Solanum tuberosum HOM05D006600 ORTHO05D008446 1.2e-117 427.2 323 75.2
unitig_62.g23648 Utricularia gibba HOM05D006600 ORTHO05D008446 1.2e-117 427.2 318 63.5
Oeu050861.1 Olea europaea HOM05D006600 ORTHO05D008446 2.6e-117 426.0 320 65.6
MELO3C010818.2 Cucumis melo HOM05D006600 ORTHO05D008446 3.4e-117 425.6 323 77.1
Migut.C00501 Erythranthe guttata HOM05D006600 ORTHO05D008446 4.4e-117 425.2 317 78.2
PGR083G0558 Punica granatum HOM05D006600 ORTHO05D008446 7.5e-117 424.5 323 77.4
Actinidia38095 Actinidia chinensis HOM05D006600 ORTHO05D008446 9.8e-117 424.1 323 77.7
FAN20G2273 Fragaria x ananassa HOM05D006600 ORTHO05D008446 9.8e-117 424.1 325 70.8
FAN24G1058 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.3e-116 423.7 327 77.1
FvH4_2g33350 Fragaria vesca HOM05D006600 ORTHO05D008446 1.7e-116 423.3 327 77.1
FAN15G1504 Fragaria x ananassa HOM05D006600 ORTHO05D008446 2.2e-116 422.9 325 77.2
AUR62038783 Chenopodium quinoa HOM05D006600 ORTHO05D008446 3.7e-116 422.2 325 60.6
CDE04G0491 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 4.9e-116 421.8 326 62.6
HanXRQChr10g0304021 Helianthus annuus HOM05D006600 ORTHO05D008446 4.9e-116 421.8 326 64.1
CANSAT35G1599 Cannabis sativa HOM05D006600 ORTHO05D008446 1.1e-115 420.6 326 77.0
Peaxi162Scf00081g00125 Petunia axillaris HOM05D006600 ORTHO05D008446 1.4e-115 420.2 323 76.2
DCAR_020080 Daucus carota HOM05D006600 ORTHO05D008446 1.9e-115 419.9 323 74.9
Nitab4.5_0000934g0020 Nicotiana tabacum HOM05D006600 ORTHO05D008446 2.4e-115 419.5 323 62.2
AUR62037454 Chenopodium quinoa HOM05D006600 ORTHO05D008446 3.2e-115 419.1 325 60.6
RcHm_v2.0_Chr6g0309231 Rosa chinensis HOM05D006600 ORTHO05D008446 3.2e-115 419.1 327 76.1
MSTRG.1040 Avicennia marina HOM05D006600 ORTHO05D008446 4.1e-115 418.7 325 74.2
Aqoxy6G02751 Aquilegia oxysepala HOM05D006600 ORTHO05D008446 5.4e-115 418.3 328 75.6
Hma1.2p1_0923F.1_g236990 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 1.2e-114 417.2 324 77.2
MBI16_g13383_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D008446 1.2e-114 417.2 324 63.0
TAR625G0631 Trochodendron aralioides HOM05D006600 ORTHO05D008446 1.2e-114 417.2 323 75.9
Nitab4.5_0003228g0070 Nicotiana tabacum HOM05D006600 ORTHO05D008446 4.6e-114 415.2 323 61.6
SalBow7G4697 Salvia bowleyana HOM05D006600 ORTHO05D008446 5.0e-113 411.8 317 76.7
SGA_v2.0_scaffold244G44349 Striga asiatica HOM05D006600 ORTHO05D008446 8.6e-113 411.0 316 61.4
Haze_22302 Corylus avellana HOM05D006600 ORTHO05D008446 4.3e-112 408.7 323 73.7
EL10As7g23812 Beta vulgaris HOM05D006600 ORTHO05D008446 2.8e-111 406.0 367 65.1
FAN27G3009 Fragaria x ananassa HOM05D006600 ORTHO05D008446 2.8e-111 406.0 325 74.8
Cpa.g.sc21.115 Carica papaya HOM05D006600 ORTHO05D008446 7.5e-109 397.9 236 75.8
GSVIVG01009372001 Vitis vinifera HOM05D006600 ORTHO05D008446 7.5e-109 397.9 232 77.2
ATR0030G048 Amborella trichopoda HOM05D006600 ORTHO05D008446 2.9e-108 396.0 331 71.9
Lj4A761T87 Lonicera japonica HOM05D006600 ORTHO05D008446 7.1e-107 391.3 235 74.0
Zm00001eb214310 Zea mays HOM05D006600 ORTHO05D008446 1.6e-106 390.2 319 58.3
SEGI_28402 Sequoiadendron giganteum HOM05D006600 ORTHO05D008446 4.6e-106 388.7 320 72.5
CAN.G1054.24 Capsicum annuum HOM05D006600 ORTHO05D008446 1.7e-105 386.7 233 73.4
Os03g0761200 Oryza sativa ssp. japonica HOM05D006600 ORTHO05D008446 2.5e-104 382.9 318 57.5
HPP92_018760 Vanilla planifolia HOM05D006600 ORTHO05D008446 3.1e-102 375.9 330 56.1
SMO228G0045 Selaginella moellendorffii HOM05D006600 ORTHO05D008446 2.4e-99 366.3 318 55.0
COL.COLO4_28538 Corchorus olitorius HOM05D006600 ORTHO05D008446 4.3e-96 355.5 330 54.5
AL8G43570 Arabidopsis lyrata HOM05D006600 ORTHO05D008446 4.7e-95 352.1 251 88.4
AagrBONN_evm.TU.Sc2ySwM_228.1907 Anthoceros agrestis HOM05D006600 ORTHO05D008446 1.1e-94 350.9 325 67.4
Nn1g04625 Nelumbo nucifera HOM05D006600 ORTHO05D008446 5.2e-94 348.6 325 68.9
Mapoly0063s0069 Marchantia polymorpha HOM05D006600 ORTHO05D008446 1.5e-93 347.1 321 67.6
BcaC01g02829 Brassica carinata HOM05D006600 ORTHO05D008446 3.3e-88 329.3 228 72.4
Potri.014G019000 Populus trichocarpa HOM05D006600 ORTHO05D008446 5.3e-86 322.0 264 78.4
Duzib093G2027 Durio zibethinus HOM05D006600 ORTHO05D008446 4.4e-85 318.9 263 58.2
Hma1.2p1_0923F.1_g236980 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 4.6e-82 308.9 283 73.1
ECA246G2737 Erigeron canadensis HOM05D006600 ORTHO05D008446 1.0e-81 307.8 263 74.9
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 5.6e-80 302.0 251 60.6
Sc26g0004110 Simmondsia chinensis HOM05D006600 ORTHO05D008446 9.0e-78 294.7 250 77.2
Pp3c17_19880 Physcomitrium patens HOM05D006600 ORTHO05D008446 1.9e-67 260.4 249 71.5
Cre01.g050050 Chlamydomonas reinhardtii HOM05D006600 ORTHO05D008446 3.5e-66 256.1 373 36.5
MCO09G534 Micromonas commoda HOM05D006600 ORTHO05D008446 4.0e-62 242.7 329 45.6
MD15G1072900 Malus domestica HOM05D006600 ORTHO05D008446 6.7e-57 225.3 193 57.5
CBR_g40512 Chara braunii HOM05D000409 ORTHO05D000184 3.3e-56 223.0 192 52.1
TAR624G0301 Trochodendron aralioides HOM05D006600 ORTHO05D008446 4.6e-50 202.6 140 65.0
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.2e-45 188.0 125 68.8
TAR374G0485 Trochodendron aralioides HOM05D000474 ORTHO05D003648 7.2e-43 178.7 128 61.7
Actinidia08258 Actinidia chinensis HOM05D006600 ORTHO05D008446 6.5e-36 155.6 96 70.8
Oeu040380.1 Olea europaea HOM05D006600 ORTHO05D008446 8.3e-15 85.5 84 56.0
MBI16_g35586_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D001493 4.5e-13 79.7 80 48.8
CBR_g40511 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-09 66.2 152 32.2
Dinv39240 Davidia involucrata HOM05D006600 ORTHO05D008446 8.3e-07 58.9 97 39.2
Actinidia08259 Actinidia chinensis HOM05D006600 ORTHO05D008446 1.1e-06 58.5 42 64.3
GSVIVG01038121001 Vitis vinifera HOM05D006600 ORTHO05D008446 2.4e-06 57.4 41 61.0


User provided reference genes

Program Settings