Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 4.3e-97 358.6 277 100.0
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.1e-84 317.4 277 92.8
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 3.2e-84 315.8 278 92.1
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 5.1e-82 308.5 278 91.4
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 6.6e-82 308.1 280 91.4
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 3.3e-81 305.8 278 90.3
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 1.3e-80 303.9 278 89.9
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 1.3e-80 303.9 278 89.6
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 1.3e-80 303.9 278 89.9
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 8.1e-80 301.2 278 89.2
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.1e-79 299.3 277 89.2
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 2.6e-78 296.2 278 87.4
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.2e-75 287.3 278 87.1
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.8e-74 283.5 278 86.7
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.9e-73 280.0 279 85.7
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.3e-73 279.3 277 87.0
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 3.1e-71 272.7 283 84.1
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 3.1e-71 272.7 277 83.4
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 9.0e-71 271.2 278 84.9
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 2.6e-70 269.6 278 84.5
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 2.6e-70 269.6 278 84.5
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 3.4e-70 269.2 272 86.0
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 3.4e-70 269.2 279 84.9
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 5.8e-70 268.5 280 85.0
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 5.8e-70 268.5 280 85.0
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 5.8e-70 268.5 280 85.0
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.0e-69 267.7 267 87.3
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 1.7e-69 266.9 278 84.2
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 1.7e-69 266.9 280 84.6
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 1.7e-69 266.9 280 84.6
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 6.3e-64 248.4 278 68.7
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 7.6e-62 241.5 267 82.8
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.3e-61 240.7 271 72.3
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 2.2e-61 240.0 269 80.7
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.1e-60 237.7 267 81.6
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.9e-60 236.9 268 82.5
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 5.5e-60 235.3 267 81.6
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.2e-60 235.0 267 80.9
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.2e-59 234.2 267 82.0
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.2e-59 234.2 267 82.0
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 1.6e-59 233.8 276 77.5
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.1e-59 233.4 267 81.3
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.1e-59 233.4 267 80.5
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.3e-58 229.9 266 79.7
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 3.9e-58 229.2 266 80.8
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.9e-58 229.2 266 80.1
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 3.9e-58 229.2 266 80.1
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 3.9e-58 229.2 267 79.4
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 5.1e-58 228.8 254 80.7
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 6.7e-58 228.4 265 80.4
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 6.7e-58 228.4 258 80.6
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 8.7e-58 228.0 267 78.3
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 8.7e-58 228.0 264 79.5
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 8.7e-58 228.0 264 79.5
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 8.7e-58 228.0 266 77.8
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.9e-57 226.9 264 79.2
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.9e-57 226.9 267 79.4
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.5e-57 226.5 264 78.8
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 3.3e-57 226.1 263 80.2
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 5.7e-57 225.3 267 77.9
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.6e-56 223.8 273 77.3
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 2.8e-56 223.0 267 77.9
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.8e-56 223.0 270 78.9
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 6.3e-56 221.9 268 78.7
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 8.2e-56 221.5 264 78.4
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.1e-55 221.1 267 77.9
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 1.4e-55 220.7 267 77.2
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 1.4e-55 220.7 267 77.2
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.4e-55 219.9 267 77.5
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 2.4e-55 219.9 263 77.6
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 3.1e-55 219.5 267 77.5
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 4.1e-55 219.2 251 80.1
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 6.9e-55 218.4 266 77.4
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 6.9e-55 218.4 266 77.8
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 1.2e-54 217.6 267 77.2
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 1.2e-54 217.6 267 77.2
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.2e-54 217.6 267 75.7
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 1.5e-54 217.2 273 76.2
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.5e-54 217.2 267 77.2
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.6e-54 216.5 267 77.5
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 3.4e-54 216.1 269 77.0
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 3.4e-54 216.1 276 75.7
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 5.9e-54 215.3 267 76.4
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 7.7e-54 214.9 274 74.1
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 2.9e-53 213.0 252 80.2
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.8e-53 212.6 267 76.8
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.8e-53 212.6 267 76.8
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 3.8e-53 212.6 249 78.3
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 3.8e-53 212.6 264 72.0
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 5.0e-53 212.2 264 73.5
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 5.0e-53 212.2 268 76.1
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 5.0e-53 212.2 253 79.4
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.1e-52 211.1 268 76.1
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.4e-52 210.7 268 76.9
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 2.5e-52 209.9 243 81.9
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 3.2e-52 209.5 268 75.0
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 4.2e-52 209.1 264 76.5
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 1.2e-51 207.6 268 77.2
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 1.6e-51 207.2 266 72.2
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 2.1e-51 206.8 266 73.3
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 2.7e-51 206.5 269 74.7
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 3.6e-51 206.1 267 74.5
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 6.1e-51 205.3 266 69.9
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 6.1e-51 205.3 272 74.3
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 7.9e-51 204.9 268 72.8
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.4e-50 204.1 270 74.4
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.8e-50 203.8 270 74.8
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 3.0e-50 203.0 286 72.0
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.1e-49 201.1 250 78.0
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.5e-49 200.7 270 49.3
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 2.6e-49 199.9 270 73.0
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 2.6e-49 199.9 269 74.0
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 4.3e-49 199.1 252 75.8
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 1.3e-48 197.6 262 72.9
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 1.3e-48 197.6 262 72.9
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.7e-48 197.2 268 73.1
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 2.8e-48 196.4 273 72.2
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 6.3e-48 195.3 249 75.9
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.8e-47 193.7 229 84.3
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 6.9e-47 191.8 273 72.5
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.2e-46 191.0 258 76.4
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 3.4e-46 189.5 268 65.3
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.0e-45 188.0 277 42.2
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 5.0e-45 185.7 250 77.6
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.4e-44 184.1 271 73.1
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.9e-44 183.7 240 79.2
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 3.6e-43 179.5 273 68.5
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 3.6e-43 179.5 267 69.7
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 4.7e-43 179.1 229 81.2
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 2.3e-42 176.8 271 72.7
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 6.7e-42 175.3 251 74.5
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 3.3e-41 172.9 259 71.0
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 5.7e-41 172.2 235 79.6
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 7.4e-41 171.8 253 68.4
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 7.4e-41 171.8 229 79.9
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.3e-40 171.0 228 80.7
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.7e-40 170.6 279 68.5
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.2e-40 170.2 275 66.2
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 2.2e-40 170.2 260 70.4
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.1e-39 167.9 226 79.6
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 5.2e-34 149.1 213 79.8
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 1.5e-33 147.5 210 81.4
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 9.7e-33 144.8 225 75.1
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.4e-31 140.2 218 78.4
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.2e-30 137.9 80 80.0
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 9.4e-28 128.3 87 72.4
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.6e-27 126.3 97 66.0
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.5e-25 120.9 87 66.7
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 7.0e-23 112.1 275 60.4
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.7e-22 110.2 258 62.0
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 7.7e-22 108.6 265 50.6
BcaB04g20035 Brassica carinata HOM05D004527 ORTHO05D005335 2.5e-20 103.6 60 83.3
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 4.2e-20 102.8 249 57.8
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.6e-19 100.9 83 57.8
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 3.6e-19 99.8 87 57.5
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.8e-18 95.5 83 59.0
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.8e-10 70.9 55 65.5
SEGI_31292 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 4.9e-08 62.8 100 39.0
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 1.4e-07 61.2 233 58.8
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 4.1e-07 59.7 96 38.5
Manes.01G019000 Manihot esculenta HOM05D000094 ORTHO05D001056 5.4e-07 59.3 79 41.8
AagrBONN_evm.TU.Sc2ySwM_344.3554 Anthoceros agrestis HOM05D000094 ORTHO05D001056 7.0e-07 58.9 99 38.4
AUR62028640 Chenopodium quinoa HOM05D000094 ORTHO05D001056 2.0e-06 57.4 110 35.5
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 2.0e-06 57.4 117 31.6
arahy.Tifrunner.gnm1.ann1.VYJ8LR Arachis hypogaea HOM05D000094 ORTHO05D001056 2.7e-06 57.0 102 35.3
TWI60G0126 Tripterygium wilfordii HOM05D000029 ORTHO05D003419 2.7e-06 57.0 100 36.0
VMungo0331G1233 Vigna mungo HOM05D000094 ORTHO05D001056 3.5e-06 56.6 98 34.7


User provided reference genes

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