Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 0.0e+00 1243.8 655 100.0
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 0.0e+00 1113.2 654 88.5
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.9e-305 1052.0 646 85.6
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 2.5e-305 1051.6 644 84.9
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 2.4e-303 1045.0 648 82.9
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 3.9e-298 1027.7 662 83.2
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 8.7e-298 1026.5 648 82.7
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 8.4e-293 1010.0 662 81.4
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 7.8e-291 1003.4 660 81.5
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 1.3e-285 986.1 660 80.0
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 1.0e-277 959.9 650 78.6
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 4.2e-236 821.6 659 65.4
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.0e-226 790.4 637 64.5
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.0e-226 790.4 641 63.5
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.7e-224 783.1 658 62.3
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 2.7e-222 775.8 649 63.0
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 2.3e-221 772.7 656 62.3
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 1.4e-218 763.5 646 63.2
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 2.3e-218 762.7 646 60.8
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.5e-217 760.0 651 60.5
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 3.4e-217 758.8 645 60.9
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 5.7e-217 758.1 654 60.9
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.7e-216 756.5 646 62.1
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 4.9e-216 755.0 653 61.7
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 4.9e-216 755.0 649 60.9
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 4.9e-216 755.0 647 60.7
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 4.9e-216 755.0 647 61.5
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 3.2e-215 752.3 647 62.4
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 2.0e-214 749.6 646 59.9
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.6e-211 740.0 663 59.3
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 2.1e-211 739.6 657 59.8
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 8.0e-211 737.6 662 60.1
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.6e-209 732.6 656 59.9
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 4.4e-209 731.9 648 59.6
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 9.8e-209 730.7 672 58.5
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 1.3e-208 730.3 632 61.6
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 3.7e-208 728.8 647 59.7
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 6.4e-208 728.0 662 59.2
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 1.9e-207 726.5 638 59.9
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 4.1e-207 725.3 643 60.8
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 5.4e-207 724.9 642 61.5
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 5.4e-207 724.9 648 59.3
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.2e-206 723.8 639 60.3
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 7.8e-206 721.1 659 58.7
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 1.3e-205 720.3 646 59.9
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 8.6e-205 717.6 661 59.5
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 3.3e-204 715.7 662 57.1
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 2.8e-203 712.6 648 59.1
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 1.1e-202 710.7 647 59.0
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 3.1e-202 709.1 651 58.4
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 4.0e-202 708.8 638 59.4
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 8.9e-202 707.6 658 58.1
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.5e-201 706.8 658 57.9
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 2.6e-201 706.1 640 58.3
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 4.4e-201 705.3 652 58.3
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.4e-201 705.3 660 58.2
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 5.8e-201 704.9 673 55.7
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 7.5e-201 704.5 642 57.5
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.7e-200 703.4 658 56.5
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 4.9e-200 701.8 678 57.5
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 6.4e-200 701.4 645 57.2
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 1.9e-199 699.9 656 57.0
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 6.0e-198 694.9 619 59.5
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.7e-197 693.3 657 58.0
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 5.6e-196 688.3 651 56.7
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 4.7e-195 685.3 659 56.1
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.4e-194 683.7 650 58.0
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 1.2e-193 680.6 645 56.1
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 1.5e-193 680.2 698 55.0
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 9.9e-193 677.6 682 53.8
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 1.7e-192 676.8 639 57.7
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 3.7e-192 675.6 659 54.8
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 3.7e-192 675.6 659 54.8
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 4.9e-192 675.2 659 56.8
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.2e-190 670.6 639 57.3
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.6e-190 670.2 639 56.3
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 8.6e-189 664.5 610 57.9
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 7.3e-188 661.4 644 56.2
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 2.4e-186 656.4 645 52.9
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 7.1e-183 644.8 675 52.4
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 5.6e-180 635.2 499 63.5
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 6.2e-179 631.7 655 54.2
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.0e-177 626.7 486 72.4
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 4.6e-174 615.5 543 58.6
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 3.1e-170 602.8 647 52.6
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.6e-169 599.7 588 54.9
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 9.9e-169 597.8 564 57.1
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.2e-166 590.9 491 60.9
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 3.5e-166 589.3 527 58.4
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 3.5e-166 589.3 501 59.5
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 2.9e-160 569.7 682 48.5
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 1.6e-158 563.9 669 48.1
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.8e-157 560.5 693 46.9
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 2.3e-157 560.1 656 48.8
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 2.5e-156 556.6 535 57.9
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 7.9e-142 508.4 538 52.6
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.0e-136 489.2 598 47.8
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.4e-130 470.3 643 42.8
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 8.2e-123 445.3 442 57.7
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 4.1e-114 416.4 518 46.9
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 9.1e-114 415.2 751 36.5
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 2.5e-111 407.1 684 38.9
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 4.4e-100 369.8 283 65.4
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 7.3e-95 352.4 580 38.8
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 4.7e-86 323.2 378 50.5
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 2.3e-85 320.9 342 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 1.5e-84 318.2 646 35.1
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 7.1e-82 309.3 333 53.5
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 1.3e-80 305.1 173 87.3
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 5.6e-79 299.7 290 57.9
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 5.2e-77 293.1 287 56.1
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 4.9e-75 286.6 494 38.7
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.1e-70 271.2 422 46.9
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 4.2e-66 256.9 331 45.3
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 4.6e-65 253.4 289 52.6
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.9e-63 248.1 205 64.9
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 4.6e-57 226.9 357 41.2
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 3.0e-56 224.2 180 73.9
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.1e-53 215.7 149 71.8
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 2.2e-51 208.0 116 81.9
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 6.4e-51 206.5 157 67.5
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 6.2e-46 189.9 194 51.0
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 2.6e-44 184.5 382 38.5
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 8.5e-35 152.9 239 37.7
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 7.2e-34 149.8 682 28.4
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 1.5e-31 142.1 112 72.3
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 6.5e-27 126.7 112 66.1
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.6e-17 95.5 55 85.5
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 4.4e-15 87.4 91 53.8
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.7e-14 85.5 130 44.6
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 1.4e-13 82.4 99 46.5
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.3e-11 75.9 161 36.6
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.9e-11 74.7 57 59.6
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 7.2e-10 70.1 63 50.8
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 9.4e-10 69.7 59 57.6
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 1.6e-09 68.9 63 50.8
A02p43970 Brassica napus HOM05D005709 ORTHO05D006306 3.6e-09 67.8 61 72.1


User provided reference genes

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