Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 4.5e-189 664.5 342 100.0
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.7e-151 539.7 342 82.2
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 4.9e-143 511.5 343 80.5
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 2.1e-141 506.1 343 80.2
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 2.5e-139 499.2 342 78.4
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 2.5e-139 499.2 342 78.4
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 2.5e-139 499.2 342 78.4
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 2.8e-138 495.7 349 79.1
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.2e-119 433.0 345 73.0
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 3.2e-118 429.1 342 71.3
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 4.2e-118 428.7 344 72.1
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 7.1e-118 427.9 344 70.6
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 8.7e-116 421.0 345 71.6
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 4.3e-115 418.7 343 70.8
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 6.2e-114 414.8 346 71.4
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.4e-113 413.7 346 71.1
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.3e-108 397.1 351 63.8
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 2.8e-106 389.4 348 67.2
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 7.9e-101 371.3 313 70.0
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.8e-90 336.3 342 57.9
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 5.9e-88 328.6 360 56.4
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.2e-77 294.3 339 54.0
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.6e-72 276.6 339 52.5
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 2.8e-66 256.5 354 48.0
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 8.2e-66 255.0 345 49.6
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 3.1e-65 253.1 342 51.2
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.7e-64 250.0 343 48.4
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.7e-61 240.0 262 56.5
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 6.6e-55 218.8 342 46.2
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 6.6e-55 218.8 342 46.2
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 4.7e-53 212.6 342 45.0
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 2.6e-51 206.8 343 44.6
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.1e-46 191.4 370 39.2
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 3.3e-46 189.9 370 38.1
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 2.8e-45 186.8 357 38.9
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.4e-44 184.5 370 37.0
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.3e-44 183.7 361 38.2
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 6.8e-44 182.2 340 38.8
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 2.0e-43 180.6 364 39.0
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.7e-42 177.6 335 37.6
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 4.1e-41 172.9 358 34.9
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 5.4e-41 172.6 147 57.8
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.2e-40 171.4 342 37.7
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.2e-40 171.4 342 37.7
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.7e-40 170.2 327 37.0
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 4.6e-40 169.5 360 37.2
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 7.8e-40 168.7 358 36.6
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.3e-39 167.9 365 38.9
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.0e-39 166.8 341 34.9
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 2.5e-38 163.7 373 33.8
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.3e-38 163.3 356 37.4
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 7.3e-38 162.2 381 33.3
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 9.5e-38 161.8 364 35.4
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.2e-37 161.4 368 34.2
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.1e-37 160.6 361 35.7
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 2.1e-37 160.6 368 35.1
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 2.1e-37 160.6 341 34.0
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.8e-37 160.2 364 34.9
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 2.8e-37 160.2 364 36.3
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 6.2e-37 159.1 356 36.8
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 6.2e-37 159.1 364 34.3
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.8e-36 157.5 369 35.2
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 5.2e-36 156.0 366 34.7
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 5.2e-36 156.0 182 47.3
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 5.2e-36 156.0 145 53.1
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.2e-35 154.8 149 51.7
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.5e-35 154.5 342 36.0
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 5.8e-35 152.5 360 33.3
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 2.9e-34 150.2 371 34.5
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 4.9e-34 149.4 390 32.8
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.1e-33 148.3 367 33.8
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 2.4e-33 147.1 363 34.7
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 3.2e-33 146.7 94 83.0
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 4.1e-33 146.4 188 44.1
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.2e-32 144.8 312 34.3
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 7.8e-32 142.1 361 32.1
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.7e-31 141.0 353 34.6
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 2.3e-31 140.6 364 31.6
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 3.9e-31 139.8 328 33.2
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.5e-30 137.1 354 32.8
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.2e-29 134.8 311 33.8
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.6e-29 134.4 193 42.0
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 6.2e-29 132.5 344 31.7
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 6.2e-29 132.5 344 30.8
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 1.4e-28 131.3 324 32.1
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 3.1e-28 130.2 153 41.8
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.0e-28 129.8 345 33.6
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 8.9e-28 128.6 183 41.0
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.5e-27 127.9 376 30.6
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.0e-27 127.5 138 49.3
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 2.2e-26 124.0 211 34.6
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.7e-26 123.2 365 30.1
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 3.7e-26 123.2 205 39.0
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.7e-26 123.2 227 33.5
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 3.7e-26 123.2 321 33.0
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 4.9e-26 122.9 187 42.2
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 6.4e-26 122.5 343 30.9
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 8.3e-26 122.1 175 41.1
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.1e-25 121.7 112 50.9
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 1.9e-25 120.9 155 42.6
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.9e-25 120.9 337 28.2
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 1.9e-25 120.9 181 38.7
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 3.2e-25 120.2 246 35.0
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 5.4e-25 119.4 342 29.2
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.2e-24 118.2 134 45.5
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 2.1e-24 117.5 337 31.5
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 4.6e-24 116.3 142 47.9
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 7.8e-24 115.5 134 44.8
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.0e-23 115.2 216 35.6
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.0e-23 115.2 216 35.6
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.3e-23 114.8 354 31.4
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 2.3e-23 114.0 329 29.5
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.1e-22 111.7 120 45.8
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.9e-22 110.9 352 29.0
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 1.9e-22 110.9 231 36.4
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 3.3e-22 110.2 352 28.7
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 5.6e-22 109.4 114 47.4
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 5.6e-22 109.4 329 30.7
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 7.3e-22 109.0 113 46.9
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 8.1e-21 105.5 335 32.8
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.4e-20 104.8 194 37.1
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 3.1e-20 103.6 250 32.4
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 6.8e-20 102.4 113 46.9
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.2e-19 101.7 323 31.6
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 9.9e-19 98.6 327 30.3
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 7.1e-17 92.4 121 45.5
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 1.6e-16 91.3 318 28.3
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 5.6e-14 82.8 263 27.0
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 9.6e-14 82.0 368 27.7
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 3.6e-13 80.1 339 26.0
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.2e-11 75.1 107 42.1
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 5.8e-11 72.8 90 41.1
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 5.8e-11 72.8 104 40.4
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 1.9e-09 67.8 140 32.1
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 2.1e-08 64.3 318 26.1
BcaNung06448 Brassica carinata HOM05D005306 ORTHO05D006158 7.8e-08 62.4 211 31.3
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 7.8e-08 62.4 254 28.7
BcaC05g28701 Brassica carinata HOM05D005306 ORTHO05D006158 1.0e-07 62.0 72 51.4
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.0e-07 62.0 318 26.1
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 1.5e-06 58.2 137 28.5
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 5.6e-06 56.2 134 29.1
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 9.6e-06 55.5 125 30.4


User provided reference genes

Program Settings