Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 4.8e-106 387.9 200 100.0
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 2.7e-85 318.9 201 83.6
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 2.7e-85 318.9 201 83.6
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 2.7e-85 318.9 201 83.6
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 4.6e-85 318.2 201 84.6
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 3.0e-84 315.5 202 83.7
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.1e-83 313.5 201 83.1
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 5.7e-83 311.2 199 83.9
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 4.8e-82 308.1 201 81.6
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 2.6e-75 285.8 202 76.7
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 2.4e-73 279.3 198 77.8
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 4.5e-72 275.0 165 85.5
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.6e-59 232.6 197 65.5
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 7.5e-59 231.1 202 67.3
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 8.2e-58 227.6 196 67.3
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 1.1e-57 227.3 199 65.8
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 3.1e-57 225.7 197 62.9
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 2.7e-56 222.6 199 63.8
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 3.5e-56 222.2 186 63.4
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 4.5e-56 221.9 200 63.5
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 4.5e-56 221.9 200 63.5
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 1.7e-55 219.9 200 63.5
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 2.9e-55 219.2 200 63.0
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 2.9e-55 219.2 197 61.4
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 1.9e-54 216.5 200 62.0
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 1.0e-47 194.1 201 59.7
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 7.8e-40 167.9 202 48.5
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 2.6e-35 152.9 191 44.5
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 7.5e-35 151.4 194 44.3
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 1.3e-34 150.6 209 45.0
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.3e-34 150.6 194 45.9
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 2.2e-34 149.8 192 42.7
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 3.7e-34 149.1 202 45.0
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 4.9e-34 148.7 194 44.3
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 3.2e-33 146.0 192 43.8
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 3.2e-33 146.0 196 43.9
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 3.2e-33 146.0 196 43.9
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 4.1e-33 145.6 203 44.3
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 7.0e-33 144.8 194 43.3
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 7.0e-33 144.8 194 43.3
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 6.0e-32 141.7 203 42.4
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 1.0e-31 141.0 194 42.3
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 1.3e-31 140.6 191 41.9
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 2.3e-31 139.8 209 46.4
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 3.0e-31 139.4 201 43.3
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 3.0e-31 139.4 201 43.3
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 5.0e-31 138.7 201 42.3
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 3.3e-30 136.0 195 42.1
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 3.3e-30 136.0 197 41.6
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 5.6e-30 135.2 196 38.3
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 7.3e-30 134.8 197 42.6
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.2e-29 134.0 200 40.0
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 2.8e-29 132.9 203 42.9
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 2.8e-29 132.9 200 40.5
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 4.7e-29 132.1 123 61.0
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.7e-29 132.1 207 38.6
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 4.7e-29 132.1 197 40.6
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 6.2e-29 131.7 204 44.6
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 6.2e-29 131.7 196 38.8
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 8.0e-29 131.3 200 39.5
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 1.8e-28 130.2 197 39.1
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.0e-28 129.0 208 39.4
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.0e-28 129.0 202 40.1
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 5.2e-28 128.6 206 38.8
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 2.0e-27 126.7 200 40.0
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.6e-27 126.3 199 38.7
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.6e-27 126.3 201 40.3
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 3.4e-27 125.9 200 39.0
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.4e-27 125.9 200 39.0
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 7.5e-27 124.8 199 39.7
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 9.8e-27 124.4 197 39.6
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 1.3e-26 124.0 199 40.2
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.7e-26 123.6 207 37.7
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.7e-26 123.6 208 38.9
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.2e-26 123.2 200 39.0
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.2e-26 123.2 199 39.7
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 4.9e-26 122.1 229 38.0
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.9e-26 122.1 198 38.4
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 4.9e-26 122.1 207 37.2
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 4.9e-26 122.1 198 33.3
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 4.9e-26 122.1 189 39.2
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 6.4e-26 121.7 207 37.2
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.4e-26 121.7 202 39.1
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.3e-26 121.3 181 41.4
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.1e-25 120.9 186 41.4
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.4e-25 120.6 198 36.9
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.4e-25 120.6 201 38.3
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.9e-25 120.2 200 37.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 2.4e-25 119.8 204 38.7
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 3.2e-25 119.4 201 37.3
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 5.4e-25 118.6 176 40.3
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 5.4e-25 118.6 167 40.7
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 1.2e-24 117.5 88 67.0
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.2e-24 117.5 206 38.3
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 2.7e-24 116.3 198 36.9
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 2.7e-24 116.3 198 36.9
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 3.5e-24 115.9 198 36.9
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 1.0e-23 114.4 199 37.7
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.3e-23 114.0 203 36.9
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 1.7e-23 113.6 231 35.9
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 1.7e-23 113.6 231 35.9
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 1.7e-23 113.6 192 35.4
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.3e-23 113.2 164 42.7
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 3.9e-23 112.5 198 35.4
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 8.6e-23 111.3 206 34.0
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-22 110.9 197 37.6
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 2.5e-22 109.8 191 36.1
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 2.5e-22 109.8 200 36.0
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 5.6e-22 108.6 199 37.2
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 5.6e-22 108.6 196 38.3
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 1.2e-21 107.5 211 35.1
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 1.6e-21 107.1 200 34.5
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 3.6e-21 105.9 169 39.6
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 4.7e-21 105.5 192 35.4
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 4.7e-21 105.5 196 34.2
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 4.7e-21 105.5 192 34.4
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.7e-21 105.5 192 37.0
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.2e-21 105.1 192 38.0
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.2e-21 105.1 192 38.0
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-20 104.4 103 52.4
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 1.4e-20 104.0 196 34.2
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 2.3e-20 103.2 206 34.0
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 1.2e-19 100.9 194 35.1
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 2.0e-19 100.1 166 38.6
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 2.6e-19 99.8 197 33.5
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 3.4e-19 99.4 195 33.3
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 4.4e-19 99.0 199 36.2
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 4.4e-19 99.0 200 34.0
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 5.8e-19 98.6 199 32.2
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 7.5e-19 98.2 202 33.2
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 7.5e-19 98.2 201 34.3
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.3e-18 97.4 200 33.5
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.2e-18 96.7 204 33.8
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 2.9e-18 96.3 189 35.4
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 2.9e-18 96.3 207 35.7
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 2.9e-18 96.3 200 33.5
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 4.9e-18 95.5 210 31.0
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 6.4e-18 95.1 204 33.3
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 8.3e-18 94.7 204 33.8
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 8.3e-18 94.7 202 31.7
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 1.1e-17 94.4 126 38.9
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 1.4e-17 94.0 207 32.4
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 1.9e-17 93.6 200 32.5
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 1.9e-17 93.6 201 33.3
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 2.4e-17 93.2 171 33.9
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 2.4e-17 93.2 207 34.3
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 3.2e-17 92.8 126 39.7
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 3.2e-17 92.8 207 34.8
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 4.1e-17 92.4 206 29.6
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 5.4e-17 92.0 212 32.1
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 7.1e-17 91.7 198 34.3
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 9.2e-17 91.3 201 30.3
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 1.2e-16 90.9 207 34.8
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 2.1e-16 90.1 207 34.8
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 2.7e-16 89.7 202 31.7
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.5e-16 89.4 200 30.0
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 6.0e-16 88.6 196 31.6
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 6.0e-16 88.6 202 30.7
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 1.3e-15 87.4 206 33.0
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 1.3e-15 87.4 196 35.2
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 2.3e-15 86.7 200 30.5
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 1.1e-14 84.3 186 33.3
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.5e-14 84.0 206 33.5
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 1.5e-14 84.0 193 30.1
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 3.3e-14 82.8 82 50.0
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 4.3e-14 82.4 203 30.0
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.3e-14 82.4 118 37.3
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.3e-14 82.4 159 35.8
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 4.0e-12 75.9 166 31.3
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.8e-11 72.0 139 37.4
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 7.6e-11 71.6 142 35.9
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 9.9e-11 71.2 157 33.1
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 1.3e-10 70.9 83 38.6
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.2e-10 70.1 135 35.6
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 2.9e-10 69.7 132 40.2
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.4e-09 67.4 143 33.6
ATR0753G036 Amborella trichopoda HOM05D003474 ORTHO05D003971 1.9e-09 67.0 200 35.0
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 3.2e-09 66.2 144 34.7
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 5.4e-09 65.5 146 34.2
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 9.2e-09 64.7 134 38.8
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 2.7e-08 63.2 135 35.6
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.3e-07 60.8 135 33.3
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 1.7e-07 60.5 192 28.1
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.9e-07 59.3 128 36.7
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 5.1e-07 58.9 208 32.2
SEGI_26050 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 5.1e-07 58.9 170 30.6


User provided reference genes

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