Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.6e-200 703.4 632 100.0
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 4.2e-172 609.0 636 92.8
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 9.3e-172 607.8 636 92.8
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 4.3e-169 599.0 637 92.6
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.2e-158 564.3 635 90.4
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.7e-157 560.5 649 90.4
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 7.9e-147 525.0 634 87.9
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 8.7e-146 521.5 634 87.7
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 2.2e-144 516.9 635 87.6
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.9e-140 503.8 638 86.1
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 2.5e-140 503.4 635 86.9
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 9.4e-124 448.4 625 85.0
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 8.0e-115 418.7 633 82.1
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 6.7e-114 415.6 630 82.4
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 7.7e-110 402.1 618 80.3
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 2.2e-109 400.6 618 80.3
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 1.9e-108 397.5 633 79.8
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 1.9e-108 397.5 633 79.8
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 8.8e-106 388.7 643 77.9
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 7.0e-95 352.4 647 71.9
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 5.6e-92 342.8 639 72.1
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 7.3e-84 315.8 656 71.6
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 9.9e-73 278.9 640 70.0
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.3e-69 268.5 642 70.6
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 4.3e-68 263.5 639 68.9
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 9.9e-65 252.3 658 63.2
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 3.8e-64 250.4 668 66.2
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 1.9e-63 248.1 658 63.5
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 1.2e-62 245.4 662 62.7
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 3.5e-62 243.8 664 63.9
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 2.5e-60 237.7 662 63.3
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 4.3e-60 236.9 612 69.9
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 9.6e-60 235.7 656 62.2
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 3.6e-59 233.8 650 63.8
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 4.7e-59 233.4 661 63.7
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.8e-58 231.5 632 69.0
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.8e-58 231.5 666 62.9
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 2.0e-57 228.0 664 63.4
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 2.6e-57 227.6 652 62.9
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 2.2e-56 224.6 651 63.3
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.2e-56 224.6 660 64.5
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 1.4e-55 221.9 657 62.4
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.9e-55 221.5 654 62.2
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.4e-55 221.1 654 62.1
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 3.2e-55 220.7 227 57.3
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 4.2e-55 220.3 652 62.1
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 7.1e-55 219.5 651 64.7
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 7.1e-55 219.5 660 65.0
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 9.3e-55 219.2 652 62.4
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 2.7e-54 217.6 651 62.4
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 8.7e-53 212.6 657 61.8
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.1e-52 212.2 656 61.6
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 1.9e-52 211.5 656 61.7
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 4.3e-52 210.3 661 61.3
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 9.6e-52 209.1 660 65.0
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 2.8e-51 207.6 656 60.5
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 3.6e-51 207.2 657 61.8
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 4.8e-51 206.8 646 62.2
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 4.8e-51 206.8 656 61.9
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 6.2e-51 206.5 593 69.5
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 1.4e-50 205.3 592 66.9
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 1.8e-50 204.9 660 60.9
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 3.1e-50 204.1 655 62.1
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 5.3e-50 203.4 654 61.6
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 9.0e-50 202.6 659 61.6
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 2.9e-48 197.6 547 32.5
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 4.9e-48 196.8 665 62.3
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 6.4e-48 196.4 665 62.3
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 7.1e-47 193.0 659 60.4
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 9.3e-47 192.6 642 60.9
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 2.1e-46 191.4 645 59.7
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.1e-46 191.4 657 61.2
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 2.7e-46 191.0 653 60.6
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.7e-46 191.0 657 61.2
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 4.6e-46 190.3 654 60.4
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 7.9e-46 189.5 646 61.3
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.3e-45 188.7 664 62.8
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 3.0e-45 187.6 655 60.2
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.5e-44 185.3 657 60.7
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 4.3e-44 183.7 658 59.6
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 7.4e-44 183.0 650 59.7
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 1.3e-43 182.2 657 60.0
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 1.6e-43 181.8 637 61.9
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 3.7e-43 180.6 659 60.5
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 4.8e-43 180.3 642 60.9
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 4.8e-43 180.3 660 59.7
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 8.1e-43 179.5 261 46.4
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 8.1e-43 179.5 657 60.6
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.4e-42 177.9 638 63.0
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 3.1e-42 177.6 659 60.5
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 4.0e-42 177.2 618 64.9
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 5.3e-42 176.8 647 60.6
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 1.5e-41 175.3 660 61.4
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 3.4e-41 174.1 241 48.1
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 7.6e-41 172.9 654 60.1
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 1.7e-40 171.8 640 62.2
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 2.2e-40 171.4 657 63.0
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 8.4e-40 169.5 660 58.6
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 2.5e-39 167.9 603 62.9
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 1.2e-38 165.6 613 61.3
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 1.2e-38 165.6 657 58.6
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 1.2e-38 165.6 657 58.6
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 1.2e-38 165.6 656 58.4
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.6e-38 165.2 639 59.8
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.6e-38 165.2 637 60.4
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.1e-38 164.9 670 59.1
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 1.3e-37 162.2 613 63.9
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 1.3e-37 162.2 632 62.3
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 6.7e-37 159.8 633 59.7
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 6.7e-37 159.8 632 62.2
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 8.7e-37 159.5 636 62.4
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.5e-36 158.7 594 63.8
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 2.5e-36 157.9 634 61.7
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 7.4e-36 156.4 661 59.8
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.8e-35 154.5 651 59.1
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 6.9e-34 149.8 258 43.0
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 9.0e-34 149.4 640 59.5
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.2e-33 149.1 653 60.8
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 1.5e-33 148.7 247 43.7
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 1.5e-33 148.7 624 60.1
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 2.0e-33 148.3 265 43.0
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 5.8e-33 146.7 601 58.6
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 7.6e-33 146.4 637 61.1
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.3e-32 145.6 663 48.6
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 2.2e-32 144.8 614 60.9
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 6.5e-32 143.3 651 59.9
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 7.1e-31 139.8 642 61.1
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 1.2e-30 139.0 661 58.4
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 6.0e-30 136.7 627 50.4
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 1.0e-29 136.0 585 52.3
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 8.7e-29 132.9 642 57.3
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 4.3e-28 130.6 647 59.4
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 5.7e-28 130.2 629 59.9
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 5.7e-28 130.2 629 59.9
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.4e-26 125.6 238 63.9
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 9.0e-26 122.9 645 57.2
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.3e-24 119.0 238 39.1
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 5.0e-24 117.1 637 58.6
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.1e-22 111.7 245 35.9
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.1e-22 111.7 256 39.5
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.4e-21 109.0 237 37.1
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 2.0e-20 105.1 239 36.0
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 3.3e-20 104.4 235 35.3
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 9.7e-20 102.8 610 57.4
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 2.2e-19 101.7 262 36.3
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 2.8e-19 101.3 633 57.0
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 3.7e-19 100.9 227 37.4
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 3.1e-18 97.8 195 40.0
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 9.1e-18 96.3 223 37.7
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 2.0e-17 95.1 211 37.4
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 7.7e-17 93.2 275 33.8
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.0e-16 92.8 243 36.2
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 1.0e-16 92.8 213 36.6
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 3.8e-16 90.9 200 38.0
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 1.6e-14 85.5 241 32.8
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 1.0e-13 82.8 631 57.7
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.4e-13 82.4 217 35.9
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 1.1e-12 79.3 445 69.2
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 2.6e-12 78.2 180 35.6
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.8e-10 72.0 200 35.0
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 4.5e-09 67.4 181 34.8
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 2.9e-08 64.7 105 41.0
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 3.8e-08 64.3 622 43.6
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 3.8e-08 64.3 124 37.1
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.4e-07 62.4 220 29.5
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 3.2e-07 61.2 117 40.2
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 5.5e-07 60.5 41 65.9
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 2.1e-06 58.5 69 49.3
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 2.1e-06 58.5 69 49.3
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 2.7e-06 58.2 41 63.4
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 2.7e-06 58.2 123 36.6
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 2.7e-06 58.2 34 73.5
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 2.7e-06 58.2 104 35.6
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 2.7e-06 58.2 104 35.6
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 2.7e-06 58.2 41 63.4
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 3.6e-06 57.8 41 61.0
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 6.1e-06 57.0 109 35.8
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 6.1e-06 57.0 34 73.5
HanXRQChr09g0253141 Helianthus annuus HOM05D003548 ORTHO05D004066 6.1e-06 57.0 219 31.5
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 8.0e-06 56.6 38 65.8
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 8.0e-06 56.6 34 70.6
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 8.0e-06 56.6 41 63.4


User provided reference genes

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