Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 1.0e-120 436.8 227 100.0
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 7.1e-114 414.1 227 93.8
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 1.4e-106 389.8 227 89.4
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 2.3e-104 382.5 228 88.6
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 2.3e-104 382.5 228 87.7
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 4.3e-103 378.3 230 89.6
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 5.6e-103 377.9 229 87.3
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 8.9e-101 370.5 229 87.3
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 2.0e-100 369.4 228 87.3
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 2.6e-100 369.0 228 86.4
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 3.4e-100 368.6 228 86.4
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 7.6e-100 367.5 228 86.4
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 1.5e-95 353.2 247 79.4
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 1.8e-93 346.3 216 87.0
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 6.4e-91 337.8 223 83.9
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 2.4e-90 335.9 217 84.8
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 9.3e-90 334.0 223 83.9
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 1.0e-88 330.5 217 83.9
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 1.0e-88 330.5 223 83.0
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 1.1e-87 327.0 223 82.5
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 1.3e-83 313.5 223 80.3
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 1.1e-82 310.5 223 77.6
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 1.5e-63 246.9 244 60.2
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 1.9e-63 246.5 247 61.9
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 5.7e-63 245.0 251 59.4
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 8.2e-62 241.1 248 58.9
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 1.8e-61 240.0 246 59.3
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 3.1e-61 239.2 249 59.0
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 4.1e-61 238.8 251 58.2
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 4.1e-61 238.8 251 58.2
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 9.0e-61 237.7 247 57.5
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 1.2e-60 237.3 246 58.5
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 2.0e-60 236.5 246 58.9
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 3.4e-60 235.7 243 59.3
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 3.4e-60 235.7 253 56.9
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 1.7e-59 233.4 249 57.0
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 3.8e-59 232.3 240 60.0
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 8.5e-59 231.1 254 58.7
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 1.4e-58 230.3 252 58.7
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 1.9e-58 229.9 257 58.4
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 3.2e-58 229.2 241 59.3
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 5.5e-58 228.4 246 57.3
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 1.6e-57 226.9 233 56.2
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.6e-57 226.9 204 63.2
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 7.9e-57 224.6 253 55.3
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 1.8e-56 223.4 198 66.7
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 2.3e-56 223.0 248 56.0
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.0e-56 222.6 254 55.5
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 3.9e-56 222.2 248 55.6
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 5.1e-56 221.9 249 53.8
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 8.8e-56 221.1 255 56.1
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 1.1e-55 220.7 235 56.2
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 1.1e-55 220.7 247 56.3
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 2.5e-55 219.5 250 55.2
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 7.4e-55 218.0 238 55.9
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 9.7e-55 217.6 245 56.3
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.3e-54 217.2 244 55.7
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.3e-54 217.2 244 55.7
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 1.7e-54 216.9 251 53.8
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 2.2e-54 216.5 245 56.3
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 4.8e-54 215.3 240 52.9
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 4.8e-54 215.3 204 58.8
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 1.1e-53 214.2 253 54.2
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 1.1e-53 214.2 239 55.6
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 2.4e-53 213.0 262 50.8
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 2.4e-53 213.0 245 53.9
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 2.4e-53 213.0 247 56.7
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 3.1e-53 212.6 269 53.5
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 5.3e-53 211.8 247 54.7
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 9.1e-53 211.1 239 55.2
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 9.1e-53 211.1 245 52.7
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 4.5e-52 208.8 243 55.6
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 7.7e-52 208.0 164 72.0
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 1.7e-51 206.8 251 51.0
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 2.2e-51 206.5 247 53.8
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 5.0e-51 205.3 272 50.0
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 5.0e-51 205.3 239 54.4
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 6.5e-51 204.9 243 52.7
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.1e-50 204.1 243 52.3
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 7.2e-50 201.4 291 48.5
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 9.4e-50 201.1 280 49.6
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 2.1e-49 199.9 242 51.2
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 2.7e-49 199.5 257 52.5
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 3.6e-49 199.1 256 50.4
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 3.6e-49 199.1 257 52.1
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 2.3e-48 196.4 188 59.0
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 2.3e-48 196.4 243 51.4
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.5e-47 193.7 264 51.9
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 3.3e-47 192.6 251 51.8
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 4.4e-47 192.2 187 56.7
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 1.3e-46 190.7 243 49.4
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 2.2e-46 189.9 243 53.5
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 2.8e-46 189.5 242 50.4
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 2.8e-46 189.5 233 53.2
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 1.4e-45 187.2 241 49.4
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 5.3e-45 185.3 242 51.2
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 5.3e-45 185.3 251 50.6
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 1.2e-44 184.1 275 49.1
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 1.0e-43 181.0 255 51.0
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 2.2e-43 179.9 234 50.4
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 2.9e-43 179.5 242 47.9
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 4.2e-42 175.6 249 50.2
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 5.5e-42 175.3 136 71.3
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 6.1e-41 171.8 129 69.0
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 8.0e-41 171.4 138 66.7
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.3e-40 169.9 138 65.9
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 6.7e-40 168.3 202 50.5
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 1.1e-39 167.5 136 68.4
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 3.3e-39 166.0 250 46.0
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 3.7e-38 162.5 229 46.7
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.4e-37 160.6 234 48.7
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 9.1e-37 157.9 235 47.7
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 4.2e-34 149.1 235 46.0
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 5.5e-34 148.7 121 66.1
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 7.2e-34 148.3 123 71.5
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 4.4e-31 139.0 71 94.4
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 7.5e-31 138.3 124 61.3
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 9.8e-31 137.9 250 40.8
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 8.3e-30 134.8 156 55.8
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 1.8e-29 133.7 90 82.2
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 5.4e-29 132.1 181 48.6
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 9.1e-29 131.3 242 40.9
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 1.2e-28 131.0 157 54.1
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 7.7e-28 128.3 136 59.6
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 1.0e-27 127.9 165 52.7
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 4.4e-23 112.5 244 41.8
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 6.3e-22 108.6 72 75.0
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 7.0e-21 105.1 179 40.8
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 2.5e-18 96.7 78 70.5
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 2.2e-14 83.6 229 31.4
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 3.7e-14 82.8 172 41.9
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.2e-12 77.8 171 36.8
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 3.5e-12 76.3 137 43.8
BolC7t46413H Brassica oleracea HOM05D005104 ORTHO05D006614 7.8e-12 75.1 57 70.2
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 5.0e-11 72.4 147 40.8
BcaC03g15832 Brassica carinata HOM05D005104 ORTHO05D007340 2.6e-07 60.1 66 54.5
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 1.7e-06 57.4 74 45.9
Cre12.g509300 Chlamydomonas reinhardtii HOM05D005104 ORTHO05D006614 4.9e-06 55.8 226 30.1
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 4.9e-06 55.8 122 36.1
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 4.9e-06 55.8 180 37.2


User provided reference genes

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