Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 2.4e-128 462.2 238 100.0
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 6.1e-108 394.4 238 85.3
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 7.9e-108 394.0 238 84.9
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 1.4e-107 393.3 238 84.9
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 1.4e-107 393.3 238 84.9
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 1.9e-106 389.4 239 83.7
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 2.5e-106 389.0 238 86.1
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 5.3e-104 381.3 238 83.6
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 5.9e-103 377.9 238 82.8
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 2.2e-102 375.9 238 81.9
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 1.1e-101 373.6 239 83.3
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 3.2e-85 318.9 253 70.4
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 5.7e-74 281.6 239 65.3
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 8.6e-54 214.5 260 50.0
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 1.3e-49 200.7 242 47.5
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 6.4e-49 198.4 241 48.5
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 1.1e-48 197.6 250 47.2
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 5.4e-48 195.3 243 49.4
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 2.1e-47 193.4 252 48.0
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 1.0e-46 191.0 249 46.6
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 1.0e-46 191.0 251 48.6
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 1.0e-46 191.0 244 48.0
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 1.0e-46 191.0 249 47.4
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 1.0e-46 191.0 240 49.2
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 2.3e-46 189.9 239 45.2
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 3.9e-46 189.1 241 46.1
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 1.5e-45 187.2 256 44.9
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 1.5e-45 187.2 239 45.6
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 1.9e-45 186.8 241 46.5
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 3.3e-45 186.0 244 49.2
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 3.3e-45 186.0 256 44.5
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 9.5e-45 184.5 239 44.8
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 6.2e-44 181.8 239 43.9
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 6.2e-44 181.8 260 45.8
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 1.8e-43 180.3 292 41.4
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 2.3e-43 179.9 248 46.8
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 4.0e-43 179.1 248 46.8
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 6.8e-43 178.3 258 42.2
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 8.9e-43 177.9 247 43.3
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 2.6e-42 176.4 250 45.2
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 7.5e-42 174.9 239 42.7
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 1.7e-41 173.7 252 42.9
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 6.4e-41 171.8 245 44.9
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 1.1e-40 171.0 246 42.3
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 1.2e-39 167.5 260 40.0
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 1.2e-39 167.5 245 42.9
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 1.2e-39 167.5 258 41.9
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 2.1e-39 166.8 252 43.3
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 7.8e-39 164.9 245 42.4
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 1.0e-38 164.5 243 41.2
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 1.7e-38 163.7 248 42.7
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 3.0e-38 162.9 256 41.4
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 1.9e-37 160.2 146 56.8
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 1.9e-37 160.2 150 56.7
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 3.3e-37 159.5 269 39.0
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 5.6e-37 158.7 266 40.2
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 5.6e-37 158.7 266 40.2
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 9.5e-37 157.9 245 43.7
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 6.2e-36 155.2 241 41.1
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 8.1e-36 154.8 211 44.1
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 1.1e-35 154.5 154 51.9
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 1.8e-35 153.7 240 40.4
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 2.4e-35 153.3 266 38.7
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 3.1e-35 152.9 268 37.7
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 4.0e-35 152.5 272 38.6
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 4.0e-35 152.5 154 55.2
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 5.2e-35 152.1 260 39.6
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 2.0e-34 150.2 231 42.9
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 7.6e-34 148.3 255 40.8
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 2.9e-33 146.4 245 39.2
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 3.8e-33 146.0 89 85.4
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 3.2e-32 142.9 249 38.2
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 5.4e-32 142.1 224 42.4
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 9.2e-32 141.4 255 39.6
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 7.8e-31 138.3 146 50.0
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 3.0e-30 136.3 211 40.8
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 5.1e-30 135.6 251 37.8
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 1.1e-29 134.4 303 34.0
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 1.1e-29 134.4 252 36.5
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 1.1e-29 134.4 236 39.4
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 1.5e-29 134.0 189 40.2
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 8.1e-28 128.3 152 48.7
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 1.4e-27 127.5 272 32.4
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 2.4e-27 126.7 234 41.0
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 4.0e-27 125.9 224 37.5
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 3.4e-26 122.9 271 32.8
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 7.1e-24 115.2 192 37.0
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 9.3e-24 114.8 238 35.3
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 2.7e-23 113.2 223 37.7
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 3.5e-23 112.8 212 35.8
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 1.7e-22 110.5 263 35.4
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 2.3e-22 110.2 101 55.4
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 2.5e-21 106.7 183 38.8
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 4.3e-21 105.9 251 33.1
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 1.6e-20 104.0 184 37.5
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 4.9e-17 92.4 114 44.7
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 1.1e-16 91.3 237 30.0
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 2.4e-16 90.1 164 37.8
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 3.2e-16 89.7 266 28.2
SHI11479 Sapria himalayana HOM05D000043 ORTHO05D002577 2.1e-15 87.0 106 40.6
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 1.8e-14 84.0 233 30.0
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 3.9e-14 82.8 158 36.1
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 8.1e-12 75.1 152 36.2
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 8.1e-12 75.1 147 36.1
Os04g0693200 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 6.4e-09 65.5 100 39.0
SEGI_25786 Sequoiadendron giganteum HOM05D021798 ORTHO05D009062 3.2e-08 63.2 157 30.6
arahy.Tifrunner.gnm1.ann1.LBHD5T Arachis hypogaea HOM05D007225 ORTHO05D009062 2.3e-06 57.0 47 63.8
CBR_g23098 Chara braunii HOM05D007225 ORTHO05D009062 5.1e-06 55.8 100 35.0


User provided reference genes

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