Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.6e-286 988.0 499 100.0
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 9.6e-257 889.8 501 88.8
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 2.1e-256 888.6 503 88.3
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 3.7e-256 887.9 505 88.1
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 3.7e-256 887.9 505 88.1
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 4.8e-256 887.5 506 87.5
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 4.8e-256 887.5 506 87.5
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 3.4e-254 881.3 501 87.6
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.0e-253 879.8 501 88.2
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 2.5e-252 875.2 495 88.7
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 5.9e-246 854.0 505 85.1
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 7.9e-243 843.6 500 86.6
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 3.8e-237 824.7 498 81.3
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.8e-203 712.2 499 71.9
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 4.6e-190 668.3 535 65.2
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 7.3e-180 634.4 498 64.9
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 2.6e-177 625.9 497 63.0
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 9.9e-177 624.0 461 65.5
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 2.9e-176 622.5 502 63.5
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 3.2e-175 619.0 483 65.0
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 3.2e-175 619.0 468 65.6
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 5.4e-175 618.2 495 64.4
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.1e-175 617.8 463 65.7
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.1e-175 617.8 495 62.8
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 9.2e-175 617.5 485 64.1
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.7e-174 615.9 486 64.6
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.0e-173 614.0 498 62.9
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.3e-173 612.8 486 64.4
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 1.1e-172 610.5 512 61.1
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.9e-172 609.8 472 65.0
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.9e-172 609.8 494 59.3
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 2.5e-172 609.4 475 63.2
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 3.3e-172 609.0 500 62.8
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 7.3e-172 607.8 472 63.3
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 2.1e-171 606.3 487 62.4
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 4.7e-171 605.1 496 63.1
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 6.2e-171 604.7 494 59.3
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.8e-170 603.2 497 61.0
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 3.1e-170 602.4 495 61.2
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 4.0e-170 602.1 530 59.4
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 5.2e-170 601.7 467 64.0
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 8.9e-170 600.9 487 62.4
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.2e-169 600.5 480 61.5
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.5e-169 600.1 483 60.9
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 4.4e-169 598.6 468 63.7
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.3e-168 597.0 498 61.2
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 2.2e-168 596.3 468 63.9
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 2.2e-168 596.3 510 59.0
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 3.8e-168 595.5 499 61.7
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.8e-168 595.5 499 61.7
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 4.9e-168 595.1 498 61.8
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 1.1e-167 594.0 498 62.2
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 1.1e-167 594.0 495 61.4
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.1e-167 594.0 510 60.2
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 2.4e-167 592.8 469 62.5
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.4e-167 592.8 503 61.4
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.4e-167 592.8 502 60.2
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.2e-167 592.4 474 63.1
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.2e-167 592.4 501 60.3
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 3.2e-167 592.4 445 64.5
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 4.2e-167 592.0 476 61.3
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 7.1e-167 591.3 496 60.9
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 9.3e-167 590.9 473 61.7
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.2e-166 590.5 492 59.6
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.6e-166 590.1 471 62.2
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 1.6e-166 590.1 471 62.8
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 3.5e-166 589.0 474 61.2
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 4.6e-166 588.6 494 60.9
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 2.3e-165 586.3 474 62.9
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 3.0e-165 585.9 472 61.9
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 3.9e-165 585.5 500 60.8
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 1.9e-164 583.2 471 61.4
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 2.5e-164 582.8 466 61.8
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.3e-164 582.4 473 62.4
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 5.6e-164 581.6 471 61.6
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 3.6e-163 578.9 506 58.3
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 4.8e-163 578.6 482 59.8
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.1e-162 577.4 470 61.9
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.8e-162 576.6 513 59.3
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.8e-162 576.6 496 58.1
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.5e-161 573.5 480 59.6
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 3.4e-161 572.4 489 58.9
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 5.8e-161 571.6 505 58.8
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 2.2e-160 569.7 495 58.4
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 2.4e-159 566.2 505 56.6
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 9.6e-156 554.3 523 56.4
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.8e-155 552.7 417 64.7
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 2.2e-152 543.1 490 58.6
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 4.9e-152 542.0 404 63.4
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.9e-151 540.0 426 61.5
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 7.6e-145 518.1 489 55.8
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 4.8e-139 498.8 490 53.5
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 3.1e-138 496.1 531 51.6
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.2e-137 494.2 395 63.8
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 3.4e-137 492.7 446 56.3
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.0e-136 491.1 494 53.2
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.5e-136 488.4 473 55.4
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 6.5e-136 488.4 390 61.5
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 8.7e-133 478.0 475 53.5
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 8.7e-133 478.0 408 58.3
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 1.5e-129 467.2 477 53.5
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 7.9e-118 428.3 440 50.7
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 2.0e-116 423.7 449 49.9
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 4.2e-111 406.0 355 58.3
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 5.7e-100 369.0 266 67.7
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 9.4e-95 351.7 235 71.5
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 9.5e-87 325.1 267 62.9
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.5e-84 317.8 290 57.9
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.0e-84 317.4 264 60.2
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.0e-84 317.4 264 60.2
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.8e-82 310.8 200 73.0
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 5.4e-82 309.3 201 72.1
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.1e-79 301.6 324 49.4
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.2e-78 298.1 321 47.4
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 1.5e-76 291.2 321 48.6
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 2.0e-73 280.8 269 54.3
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 7.3e-71 272.3 185 70.3
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 8.3e-67 258.8 213 60.6
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 1.6e-62 244.6 181 64.6
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 2.1e-62 244.2 206 56.8
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.4e-61 241.5 217 57.6
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 6.8e-61 239.2 178 66.3
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 7.6e-60 235.7 234 53.0
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 1.7e-59 234.6 212 55.7
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.5e-52 211.5 157 62.4
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 7.1e-50 202.6 170 57.1
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 6.2e-46 189.5 144 61.1
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 1.1e-39 168.7 420 27.6
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.4e-37 161.0 149 53.7
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 6.4e-35 152.9 513 31.0
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.5e-33 147.1 221 42.1
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.5e-28 131.7 136 50.0
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 5.8e-28 129.8 140 47.9
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 1.1e-26 125.6 146 47.3
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.2e-19 101.3 100 48.0
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 1.6e-17 95.1 54 81.5
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 4.8e-14 83.6 292 28.1
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 5.3e-13 80.1 61 60.7
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.5e-11 72.8 69 53.6
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 2.5e-10 71.2 158 31.6
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.6e-09 68.6 69 63.8
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 2.3e-08 64.7 57 45.6
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 3.3e-07 60.8 76 42.1
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.2e-06 56.2 99 37.4


User provided reference genes

Program Settings