Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 2.2e-163 578.9 295 100.0
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 4.2e-151 538.1 298 92.3
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 4.2e-151 538.1 295 92.9
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 7.2e-151 537.3 296 92.6
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 2.7e-150 535.4 293 92.2
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 2.7e-150 535.4 293 92.2
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 2.7e-150 535.4 293 92.2
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 2.3e-149 532.3 294 92.5
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 3.9e-149 531.6 293 91.5
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 5.7e-148 527.7 295 92.2
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 4.8e-147 524.6 293 90.8
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 4.8e-147 524.6 297 90.6
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 4.5e-137 491.5 297 84.2
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 1.5e-127 459.9 295 81.0
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 1.7e-115 419.9 295 72.5
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 4.9e-115 418.3 289 73.4
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 8.3e-115 417.5 295 73.2
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 8.3e-115 417.5 295 72.9
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 3.1e-114 415.6 300 71.7
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 9.2e-114 414.1 295 72.2
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 1.2e-113 413.7 294 73.1
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 1.0e-112 410.6 271 75.3
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 1.3e-112 410.2 290 72.4
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 2.3e-112 409.5 259 78.4
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 2.9e-112 409.1 304 69.4
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 1.1e-111 407.1 287 71.1
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 1.1e-111 407.1 293 70.3
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 2.5e-111 406.0 297 69.4
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 4.3e-111 405.2 292 70.9
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 5.6e-111 404.8 293 71.0
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 7.3e-111 404.4 308 69.2
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 7.3e-111 404.4 262 77.1
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 7.3e-111 404.4 262 77.1
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 9.5e-111 404.1 300 70.7
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.2e-110 403.7 281 72.6
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 1.6e-110 403.3 287 70.7
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 2.8e-110 402.5 263 75.7
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 2.8e-110 402.5 299 69.6
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 3.6e-110 402.1 293 70.3
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 6.1e-110 401.4 264 75.4
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 1.0e-109 400.6 268 77.2
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 1.0e-109 400.6 297 69.4
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 2.3e-109 399.4 297 70.0
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 2.3e-109 399.4 291 70.1
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 5.2e-109 398.3 300 70.0
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 1.2e-108 397.1 299 67.6
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 1.2e-108 397.1 279 72.4
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 4.4e-108 395.2 261 73.6
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 5.8e-108 394.8 301 70.4
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 7.5e-108 394.4 283 72.4
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 7.5e-108 394.4 300 68.0
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 1.7e-107 393.3 291 69.4
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 3.7e-107 392.1 262 74.0
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 4.9e-107 391.7 234 79.9
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 4.9e-107 391.7 284 68.7
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 1.1e-106 390.6 238 78.6
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 2.4e-106 389.4 263 74.1
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 1.2e-105 387.1 290 68.6
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 4.6e-105 385.2 250 75.6
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 6.0e-105 384.8 284 68.3
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 2.3e-104 382.9 296 68.6
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 3.0e-104 382.5 290 70.7
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 3.0e-104 382.5 279 69.5
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 6.6e-104 381.3 253 75.1
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 8.6e-104 380.9 230 78.7
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 1.9e-103 379.8 299 65.6
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 4.3e-103 378.6 290 66.6
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 9.5e-103 377.5 254 74.0
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 1.2e-102 377.1 272 68.8
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 1.2e-102 377.1 291 66.0
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 2.1e-102 376.3 228 77.6
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 2.8e-102 375.9 342 59.6
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 8.0e-102 374.4 276 71.0
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 1.8e-101 373.2 235 76.2
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 2.3e-101 372.9 289 65.1
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 4.0e-101 372.1 288 66.3
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 7.5e-100 367.9 295 63.7
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 2.2e-99 366.3 236 75.0
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 2.2e-99 366.3 293 64.8
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 2.9e-99 365.9 295 65.8
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 3.2e-98 362.5 239 74.9
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 4.1e-98 362.1 294 65.6
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 2.7e-97 359.4 228 75.0
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 7.8e-97 357.8 264 72.3
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 4.7e-94 348.6 238 69.7
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 6.8e-93 344.7 305 64.6
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 8.9e-93 344.4 261 69.3
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 8.9e-93 344.4 259 69.1
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 1.5e-92 343.6 256 68.0
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 1.1e-90 337.4 232 71.6
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 4.1e-90 335.5 246 68.3
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 2.4e-85 319.7 226 69.9
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 6.8e-85 318.2 228 70.6
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 1.3e-83 313.9 246 63.4
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 4.7e-78 295.4 209 71.8
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 1.5e-76 290.4 201 73.6
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 9.3e-74 281.2 197 70.6
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 1.2e-73 280.8 323 50.2
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 2.1e-73 280.0 220 66.4
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 3.2e-66 256.1 219 61.6
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 1.9e-58 230.3 143 76.2
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 1.0e-56 224.6 197 62.4
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 1.1e-55 221.1 271 49.4
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 3.7e-54 216.1 201 60.2
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.1e-45 188.0 117 77.8
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 5.9e-44 182.2 113 76.1
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 7.7e-44 181.8 115 74.8
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 1.4e-40 171.0 232 42.7
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 6.7e-40 168.7 111 70.3
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 8.8e-32 141.7 221 39.8
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 3.8e-27 126.3 75 76.0
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 1.3e-22 111.3 233 37.3
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.4e-16 91.3 63 73.0
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 2.3e-16 90.5 231 31.6
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 1.4e-08 64.7 210 31.0
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 1.4e-08 64.7 43 69.8
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 2.0e-07 60.8 33 72.7


User provided reference genes

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