Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 1.0e-48 196.4 101 100.0
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.6e-38 162.5 101 86.1
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.5e-36 156.0 102 83.3
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 2.2e-35 152.1 102 80.4
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.0e-32 143.3 102 76.5
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 9.7e-31 136.7 101 70.3
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 9.7e-31 136.7 100 72.0
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.6e-30 136.0 101 72.3
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.2e-30 135.6 100 69.0
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.2e-30 135.6 100 69.0
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 4.8e-30 134.4 102 71.6
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 1.1e-29 133.3 94 69.1
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.8e-29 132.5 100 71.0
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 4.1e-29 131.3 99 67.7
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 5.3e-29 131.0 101 65.3
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 6.9e-29 130.6 94 69.1
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.6e-28 128.6 100 66.0
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 3.4e-28 128.3 96 70.8
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 3.4e-28 128.3 104 67.3
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 5.9e-28 127.5 90 71.1
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 7.7e-28 127.1 105 65.7
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 7.7e-28 127.1 96 67.7
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.3e-27 126.3 100 64.0
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.9e-27 125.2 105 65.7
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 2.9e-27 125.2 107 63.6
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 2.9e-27 125.2 101 62.4
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 2.9e-27 125.2 94 69.1
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 2.9e-27 125.2 102 67.6
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 8.5e-27 123.6 94 66.0
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.1e-26 123.2 100 64.0
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.4e-26 122.9 99 64.6
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.9e-26 122.5 99 63.6
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 1.9e-26 122.5 94 66.0
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 3.2e-26 121.7 100 65.0
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 3.2e-26 121.7 95 68.4
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 4.2e-26 121.3 100 61.0
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 4.2e-26 121.3 102 65.7
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 4.2e-26 121.3 100 60.0
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 4.2e-26 121.3 94 63.8
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 4.2e-26 121.3 101 63.4
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 4.2e-26 121.3 95 66.3
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 5.5e-26 120.9 94 69.1
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 9.4e-26 120.2 92 65.2
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.2e-25 119.8 94 67.0
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 1.2e-25 119.8 94 69.1
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 1.2e-25 119.8 94 69.1
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 2.1e-25 119.0 101 61.4
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.1e-25 119.0 94 67.0
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 2.7e-25 118.6 94 68.1
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 2.7e-25 118.6 94 68.1
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 2.7e-25 118.6 94 68.1
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 2.7e-25 118.6 94 63.8
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 3.6e-25 118.2 94 62.8
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 4.6e-25 117.9 94 62.8
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 6.1e-25 117.5 94 61.7
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 6.1e-25 117.5 101 63.4
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 6.1e-25 117.5 100 59.0
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 6.1e-25 117.5 100 59.0
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 6.1e-25 117.5 94 61.7
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 6.1e-25 117.5 94 66.0
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 7.9e-25 117.1 96 64.6
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 1.0e-24 116.7 101 61.4
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.0e-24 116.7 100 61.0
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 1.8e-24 115.9 96 64.6
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 1.8e-24 115.9 92 64.1
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 1.8e-24 115.9 92 64.1
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 1.8e-24 115.9 92 64.1
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 1.8e-24 115.9 102 61.8
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 1.8e-24 115.9 100 62.0
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.8e-24 115.9 100 61.0
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 2.3e-24 115.5 94 64.9
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 3.0e-24 115.2 101 63.4
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 3.9e-24 114.8 100 60.0
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 6.7e-24 114.0 100 59.0
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.1e-23 113.2 105 61.0
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 1.1e-23 113.2 99 59.6
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 1.5e-23 112.8 97 59.8
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.0e-23 112.5 94 62.8
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 2.5e-23 112.1 94 60.6
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 2.5e-23 112.1 100 58.0
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 3.3e-23 111.7 100 58.0
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 3.3e-23 111.7 94 59.6
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 3.3e-23 111.7 99 58.6
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 5.7e-23 110.9 90 62.2
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 5.7e-23 110.9 94 59.6
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 5.7e-23 110.9 94 60.6
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 5.7e-23 110.9 94 62.8
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 2.2e-22 109.0 102 55.9
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.2e-22 109.0 100 58.0
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 2.2e-22 109.0 94 57.4
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 3.7e-22 108.2 99 56.6
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 3.7e-22 108.2 100 58.0
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 4.8e-22 107.8 100 56.0
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 6.3e-22 107.5 99 56.6
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 6.3e-22 107.5 99 56.6
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 6.3e-22 107.5 99 56.6
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 6.3e-22 107.5 100 54.0
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 8.2e-22 107.1 100 55.0
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 1.1e-21 106.7 93 63.4
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.4e-21 106.3 99 55.6
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.8e-21 105.9 78 70.5
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.8e-21 105.9 78 70.5
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 9.1e-21 103.6 99 56.6
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 9.1e-21 103.6 100 54.0
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.2e-20 103.2 99 55.6
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.5e-20 102.8 99 55.6
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.5e-20 102.8 74 67.6
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 3.4e-20 101.7 94 54.3
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.2e-19 99.0 79 62.0
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.1e-18 96.7 70 67.1
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 1.4e-18 96.3 72 61.1
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 1.9e-18 95.9 78 64.1
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 2.5e-18 95.5 70 62.9
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 3.2e-18 95.1 86 54.7
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 4.2e-18 94.7 101 49.5
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 9.4e-18 93.6 77 66.2
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 9.4e-18 93.6 75 60.0
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 9.4e-18 93.6 77 63.6
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 1.6e-17 92.8 79 65.8
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 2.7e-17 92.0 85 52.9
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 4.7e-17 91.3 87 58.6
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 2.3e-16 89.0 91 53.8
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 3.9e-16 88.2 91 54.9
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 8.8e-16 87.0 87 57.5
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 1.1e-15 86.7 77 58.4
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.0e-15 85.9 86 50.0
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 2.6e-15 85.5 103 48.5
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 4.4e-15 84.7 57 70.2
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 7.4e-15 84.0 103 46.6
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 3.7e-14 81.6 91 52.7
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 1.4e-13 79.7 61 62.3
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 3.1e-13 78.6 66 59.1
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 2.6e-12 75.5 89 52.8
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 1.3e-11 73.2 67 58.2
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 2.9e-11 72.0 93 44.1
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 6.5e-11 70.9 83 50.6
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 8.5e-11 70.5 62 54.8
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.5e-10 69.7 78 50.0
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 9.4e-10 67.0 55 63.6
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 9.4e-10 67.0 83 45.8
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 3.0e-08 62.0 60 50.0
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 4.0e-08 61.6 73 45.2
Cpa.g.c35589.2 Carica papaya HOM05D005070 ORTHO05D005987 2.8e-06 55.5 43 72.1
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 3.7e-06 55.1 59 49.2


User provided reference genes

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