Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 1.0e-179 633.6 417 100.0
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 3.3e-141 505.8 346 82.4
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 5.6e-141 505.0 421 74.8
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 2.3e-139 499.6 424 70.5
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 3.4e-138 495.7 419 70.6
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 3.4e-138 495.7 419 70.6
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 3.4e-138 495.7 419 70.6
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 3.9e-134 482.3 429 69.2
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 3.6e-132 475.7 333 81.7
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 1.9e-125 453.4 357 76.5
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 1.7e-118 430.3 489 58.3
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 7.6e-106 388.3 355 66.5
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 6.9e-83 312.0 346 57.2
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 1.6e-55 221.1 352 43.8
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 2.3e-54 217.2 335 45.7
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 2.3e-54 217.2 312 49.0
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.5e-53 214.5 325 45.8
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 1.5e-53 214.5 323 47.1
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.0e-53 214.2 292 49.3
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 2.0e-53 214.2 296 49.0
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 9.8e-53 211.8 338 46.7
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 9.8e-53 211.8 300 47.3
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 1.8e-51 207.6 297 47.8
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 2.4e-51 207.2 301 48.2
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 5.4e-51 206.1 296 47.0
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 9.1e-51 205.3 306 48.0
CARHR276330 Cardamine hirsuta HOM05D005535 ORTHO05D018759 4.5e-50 203.0 171 71.3
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 4.5e-50 203.0 296 44.9
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 4.5e-50 203.0 297 47.1
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 5.9e-50 202.6 261 48.7
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.3e-49 201.4 296 44.6
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.9e-49 200.3 270 50.0
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 2.9e-49 200.3 300 47.7
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.5e-48 198.0 288 45.8
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 1.9e-48 197.6 319 45.1
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 4.2e-48 196.4 319 45.5
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 4.2e-48 196.4 269 46.8
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 7.2e-48 195.7 296 44.6
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 9.5e-48 195.3 261 47.5
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.6e-47 194.5 232 50.0
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 2.1e-47 194.1 305 43.3
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 3.6e-47 193.4 295 47.5
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 1.4e-46 191.4 341 41.6
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 2.3e-46 190.7 288 46.2
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.3e-46 190.7 269 48.0
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 6.8e-46 189.1 299 42.8
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 6.8e-46 189.1 341 42.2
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 8.9e-46 188.7 274 46.4
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.5e-45 188.0 339 40.7
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.4e-45 186.4 279 44.4
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 4.4e-45 186.4 286 47.2
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 1.7e-44 184.5 280 45.4
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 2.2e-44 184.1 283 46.6
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 4.9e-44 183.0 352 41.5
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 4.9e-44 183.0 331 43.8
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 6.3e-44 182.6 339 41.0
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.1e-43 181.8 358 39.4
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 1.8e-43 181.0 336 39.9
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 3.1e-43 180.3 271 47.6
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 3.1e-43 180.3 285 43.2
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 5.4e-43 179.5 325 41.5
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 7.0e-43 179.1 292 43.2
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.6e-42 177.9 290 42.8
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 3.5e-42 176.8 301 41.9
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 4.5e-42 176.4 300 41.3
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 4.5e-42 176.4 305 43.9
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 5.9e-42 176.0 281 45.9
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 7.8e-42 175.6 301 41.5
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 2.3e-41 174.1 324 39.8
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 2.3e-41 174.1 282 45.4
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 3.8e-41 173.3 318 40.3
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 5.0e-41 172.9 312 40.4
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 5.0e-41 172.9 341 40.8
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 1.1e-40 171.8 227 49.8
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.1e-40 171.8 301 42.5
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 1.9e-40 171.0 350 38.6
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 2.5e-40 170.6 330 39.7
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 3.3e-40 170.2 325 40.3
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 3.3e-40 170.2 325 40.3
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 3.3e-40 170.2 352 40.1
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 4.3e-40 169.9 340 38.2
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 9.5e-40 168.7 277 44.8
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 2.1e-39 167.5 263 45.2
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.1e-39 167.5 265 45.7
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 2.8e-39 167.2 280 43.2
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 3.6e-39 166.8 192 54.7
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 6.1e-39 166.0 348 39.7
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 1.0e-38 165.2 333 40.8
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.4e-38 164.9 268 44.8
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 1.4e-38 164.9 283 43.5
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 3.0e-38 163.7 300 43.0
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 3.0e-38 163.7 232 45.7
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.2e-37 161.8 281 41.3
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 2.6e-37 160.6 284 43.3
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 3.4e-37 160.2 288 39.9
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 3.4e-37 160.2 337 39.8
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 7.5e-37 159.1 287 42.9
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.7e-36 157.9 324 39.8
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.7e-36 157.9 309 40.1
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 2.9e-36 157.1 288 41.3
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 3.7e-36 156.8 268 43.7
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 4.9e-36 156.4 340 38.8
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 4.9e-36 156.4 355 38.6
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 1.1e-35 155.2 354 37.9
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 2.4e-35 154.1 286 39.5
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 2.4e-35 154.1 278 41.7
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 3.2e-35 153.7 284 41.5
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 3.2e-35 153.7 322 38.8
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 4.1e-35 153.3 350 37.7
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 7.0e-35 152.5 351 36.5
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 1.2e-34 151.8 270 41.9
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.2e-34 151.8 292 38.7
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.6e-34 151.4 351 36.5
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 4.6e-34 149.8 307 39.4
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 6.0e-34 149.4 276 40.9
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 2.3e-33 147.5 322 39.4
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 6.6e-33 146.0 337 38.6
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.5e-32 144.8 324 39.2
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.5e-32 144.8 220 41.4
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 2.5e-32 144.1 280 42.1
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 4.3e-32 143.3 317 38.2
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 9.5e-32 142.1 320 39.7
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.8e-31 140.6 352 36.9
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 2.3e-30 137.5 330 38.2
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 3.1e-30 137.1 347 36.0
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 4.0e-30 136.7 258 41.9
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 8.9e-30 135.6 302 37.7
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 4.4e-29 133.3 288 36.8
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.4e-27 128.3 280 37.9
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 2.7e-26 124.0 304 38.5
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 3.5e-26 123.6 286 37.1
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 8.6e-25 119.0 296 33.8
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 3.5e-18 97.1 189 39.2
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 8.1e-15 85.9 354 27.7
THA.LOC104821571 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 8.4e-12 75.9 169 40.2
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 6.6e-09 66.2 139 28.8
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 3.3e-08 63.9 224 30.4
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 7.3e-08 62.8 176 26.1
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 2.8e-07 60.8 144 36.1
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.8e-07 60.8 176 25.6
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 2.8e-07 60.8 170 31.8
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 4.7e-07 60.1 196 28.1
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 8.1e-07 59.3 128 33.6
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.1e-06 58.9 253 26.1
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 1.4e-06 58.5 129 34.1
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 1.8e-06 58.2 69 40.6
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.8e-06 58.2 142 28.9
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 2.4e-06 57.8 82 34.1
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 2.4e-06 57.8 152 30.9
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 3.1e-06 57.4 110 32.7
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 3.1e-06 57.4 239 28.0
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 4.0e-06 57.0 189 29.1
C07p22420 Brassica napus HOM05D017569 ORTHO05D018759 5.2e-06 56.6 39 71.8
BolC7t42752H Brassica oleracea HOM05D017569 ORTHO05D018759 5.2e-06 56.6 39 71.8
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 5.2e-06 56.6 198 29.3
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 5.2e-06 56.6 126 34.1
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 5.2e-06 56.6 134 29.9
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 6.9e-06 56.2 198 27.3
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 6.9e-06 56.2 152 30.3
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 6.9e-06 56.2 36 72.2
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 6.9e-06 56.2 195 28.7
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 9.0e-06 55.8 221 27.1


User provided reference genes

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