Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 3.5e-52 208.0 103 100.0
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 7.8e-36 153.7 93 83.9
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 1.1e-34 149.8 93 82.8
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.5e-34 149.4 91 82.4
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.3e-34 147.9 91 81.3
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 4.3e-34 147.9 90 83.3
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.5e-23 112.8 91 64.8
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 5.8e-23 110.9 95 57.9
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 7.6e-23 110.5 91 63.7
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 9.9e-23 110.2 95 61.1
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.8e-22 108.2 89 62.9
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 4.6e-20 101.3 96 53.1
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 2.3e-19 99.0 92 54.3
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 8.7e-19 97.1 92 52.2
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 8.7e-19 97.1 92 52.2
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.1e-17 92.4 86 52.3
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 3.6e-17 91.7 73 57.5
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 3.6e-17 91.7 78 59.0
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 2.9e-14 82.0 90 48.9
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 6.4e-14 80.9 90 46.7
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 8.4e-14 80.5 91 50.5
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 1.1e-13 80.1 88 48.9
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 1.4e-13 79.7 82 43.9
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 1.4e-13 79.7 86 41.9
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 1.9e-13 79.3 90 43.3
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 2.4e-13 79.0 83 44.6
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 3.2e-13 78.6 83 47.0
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 3.2e-13 78.6 100 40.0
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 5.4e-13 77.8 91 45.1
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 5.4e-13 77.8 91 46.2
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 5.4e-13 77.8 100 44.0
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 5.4e-13 77.8 86 44.2
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 7.1e-13 77.4 92 45.7
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 9.3e-13 77.0 82 48.8
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 9.3e-13 77.0 93 44.1
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 1.2e-12 76.6 79 45.6
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 2.1e-12 75.9 104 39.4
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 2.1e-12 75.9 94 43.6
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.1e-12 75.9 95 41.1
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 2.7e-12 75.5 65 53.8
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 3.5e-12 75.1 69 46.4
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 3.5e-12 75.1 91 41.8
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 3.5e-12 75.1 87 48.3
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 4.6e-12 74.7 85 44.7
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 4.6e-12 74.7 89 43.8
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 4.6e-12 74.7 80 42.5
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 4.6e-12 74.7 68 48.5
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 7.8e-12 73.9 86 43.0
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 1.0e-11 73.6 97 43.3
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 1.3e-11 73.2 85 41.2
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.3e-11 73.2 93 41.9
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.7e-11 72.8 89 48.3
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.7e-11 72.8 64 53.1
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 1.7e-11 72.8 87 44.8
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 2.3e-11 72.4 83 45.8
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 2.3e-11 72.4 79 46.8
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 3.0e-11 72.0 72 47.2
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 3.0e-11 72.0 85 42.4
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 3.0e-11 72.0 85 42.4
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 3.0e-11 72.0 67 47.8
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 3.9e-11 71.6 79 43.0
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 3.9e-11 71.6 59 55.9
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 3.9e-11 71.6 67 47.8
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 3.9e-11 71.6 89 39.3
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 5.1e-11 71.2 84 45.2
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 5.1e-11 71.2 99 39.4
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 5.1e-11 71.2 65 50.8
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.6e-11 70.9 78 43.6
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 6.6e-11 70.9 86 40.7
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 8.7e-11 70.5 87 40.2
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 8.7e-11 70.5 61 47.5
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 8.7e-11 70.5 61 47.5
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 8.7e-11 70.5 67 46.3
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 1.1e-10 70.1 83 43.4
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 1.1e-10 70.1 103 42.7
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 1.5e-10 69.7 90 40.0
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.5e-10 69.7 88 39.8
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.5e-10 69.7 97 42.3
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.5e-10 69.7 97 42.3
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.5e-10 69.7 90 41.1
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.5e-10 69.7 90 41.1
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.5e-10 69.7 90 41.1
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 1.5e-10 69.7 84 41.7
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 1.5e-10 69.7 86 40.7
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 1.9e-10 69.3 79 38.0
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 1.9e-10 69.3 83 44.6
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.9e-10 69.3 89 41.6
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 2.5e-10 68.9 81 40.7
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 3.3e-10 68.6 71 40.8
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 3.3e-10 68.6 71 40.8
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 3.3e-10 68.6 85 43.5
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 4.3e-10 68.2 95 40.0
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 5.6e-10 67.8 90 38.9
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 7.3e-10 67.4 86 34.9
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 7.3e-10 67.4 84 40.5
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 9.6e-10 67.0 86 34.9
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 9.6e-10 67.0 86 34.9
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 9.6e-10 67.0 86 34.9
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 9.6e-10 67.0 93 37.6
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 9.6e-10 67.0 68 44.1
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 9.6e-10 67.0 65 47.7
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 1.3e-09 66.6 89 37.1
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.3e-09 66.6 87 44.8
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 1.3e-09 66.6 77 39.0
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.6e-09 66.2 79 36.7
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 1.6e-09 66.2 73 38.4
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.6e-09 66.2 82 42.7
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 1.6e-09 66.2 88 40.9
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 2.1e-09 65.9 66 40.9
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 2.1e-09 65.9 66 40.9
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 3.6e-09 65.1 89 34.8
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 4.8e-09 64.7 91 39.6
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 4.8e-09 64.7 92 40.2
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 6.2e-09 64.3 87 43.7
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 6.2e-09 64.3 87 43.7
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 8.1e-09 63.9 87 35.6
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 1.1e-08 63.5 87 37.9
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.4e-08 63.2 86 37.2
SEGI_28530 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 1.4e-08 63.2 89 37.1
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.8e-08 62.8 97 37.1
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 5.3e-08 61.2 92 37.0
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 5.3e-08 61.2 82 45.1
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 6.9e-08 60.8 51 52.9
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 6.9e-08 60.8 82 37.8
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.0e-07 59.3 97 33.0
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 4.5e-07 58.2 83 36.1
Os09g0525500 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 3.8e-06 55.1 83 36.1


User provided reference genes

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