Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g25230 Schrenkiella parvula HOM05D007974 ORTHO05D010062 2.3e-75 285.4 137 100.0
Thhalv10005335m.g Eutrema salsugineum HOM05D007974 ORTHO05D010062 1.9e-50 202.6 102 92.2
AT5G62065 Arabidopsis thaliana HOM05D007974 ORTHO05D010062 4.3e-50 201.4 101 91.1
BcaB02g09619 Brassica carinata HOM05D007974 ORTHO05D010062 9.7e-50 200.3 103 93.2
C03p64890 Brassica napus HOM05D007974 ORTHO05D010062 2.8e-49 198.7 100 91.0
BolC3t18751H Brassica oleracea HOM05D007974 ORTHO05D010062 2.8e-49 198.7 100 91.0
A06p28760 Brassica napus HOM05D007974 ORTHO05D010062 3.7e-49 198.4 100 91.0
BraA06t25817Z Brassica rapa HOM05D007974 ORTHO05D010062 3.7e-49 198.4 100 91.0
Carub.0008s2274 Capsella rubella HOM05D007974 ORTHO05D010062 1.8e-48 196.1 102 88.2
AL8G38840 Arabidopsis lyrata HOM05D007974 ORTHO05D010062 4.1e-48 194.9 100 89.0
CARHR275850 Cardamine hirsuta HOM05D007974 ORTHO05D010062 9.0e-48 193.7 100 88.0
Aa31LG11G1470 Aethionema arabicum HOM05D007974 ORTHO05D010062 1.7e-41 172.9 97 79.4
THA.LOC104820164 Tarenaya hassleriana HOM05D007974 ORTHO05D010062 3.9e-35 151.8 95 72.6
HanXRQChr13g0393691 Helianthus annuus HOM05D007974 ORTHO05D010062 6.1e-28 127.9 109 59.6
Atru.chr1.506 Acer truncatum HOM05D007974 ORTHO05D010062 8.0e-28 127.5 89 61.8
ECA233G5549 Erigeron canadensis HOM05D007974 ORTHO05D010062 3.9e-27 125.2 91 63.7
Lsat_1_v5_gn_8_6981 Lactuca sativa HOM05D007974 ORTHO05D010062 6.7e-27 124.4 97 61.9
MSTRG.8445 Avicennia marina HOM05D007974 ORTHO05D010062 1.1e-26 123.6 90 63.3
Eucgr.K00232 Eucalyptus grandis HOM05D007974 ORTHO05D010062 2.0e-26 122.9 116 49.1
Eucgr.L02686 Eucalyptus grandis HOM05D007974 ORTHO05D010062 2.0e-26 122.9 112 50.9
CSS0036952 Camellia sinensis var. sinensis HOM05D007974 ORTHO05D010062 3.3e-26 122.1 89 60.7
Oeu022576.1 Olea europaea HOM05D007974 ORTHO05D010062 4.4e-26 121.7 88 61.4
Ciclev10006787m.g Citrus clementina HOM05D007974 ORTHO05D010062 5.7e-26 121.3 89 53.9
Duzib068G0871 Durio zibethinus HOM05D007974 ORTHO05D010062 5.7e-26 121.3 109 51.4
QL09p014742 Quercus lobata HOM05D007974 ORTHO05D010062 5.7e-26 121.3 98 54.1
Migut.F01135 Erythranthe guttata HOM05D007974 ORTHO05D010062 7.4e-26 120.9 90 63.3
Actinidia34090 Actinidia chinensis HOM05D007974 ORTHO05D010062 2.8e-25 119.0 97 56.7
COL.COLO4_14276 Corchorus olitorius HOM05D000659 ORTHO05D000505 2.8e-25 119.0 93 55.9
DCAR_018180 Daucus carota HOM05D007974 ORTHO05D010062 2.8e-25 119.0 99 56.6
Dinv28469 Davidia involucrata HOM05D007974 ORTHO05D010062 2.8e-25 119.0 108 51.9
GSVIVG01010603001 Vitis vinifera HOM05D007974 ORTHO05D010062 2.8e-25 119.0 92 56.5
Thecc.03G172000 Theobroma cacao HOM05D007974 ORTHO05D010062 6.3e-25 117.9 91 56.0
CiPaw.04G066500 Carya illinoinensis HOM05D007974 ORTHO05D010062 8.2e-25 117.5 97 56.7
Nitab4.5_0002107g0020 Nicotiana tabacum HOM05D007974 ORTHO05D010062 1.1e-24 117.1 90 57.8
Nitab4.5_0004843g0030 Nicotiana tabacum HOM05D007974 ORTHO05D010062 1.1e-24 117.1 90 57.8
Hma1.2p1_0270F.1_g108330 Hydrangea macrophylla HOM05D007974 ORTHO05D010062 1.4e-24 116.7 89 57.3
Rhsim03G0178300 Rhododendron simsii HOM05D007974 ORTHO05D010062 1.8e-24 116.3 100 56.0
Aqoxy5G03970 Aquilegia oxysepala HOM05D007974 ORTHO05D010062 1.2e-23 113.6 112 48.2
Gohir.A12G260000 Gossypium hirsutum HOM05D007974 ORTHO05D010062 1.2e-23 113.6 92 54.3
CiPaw.03G103600 Carya illinoinensis HOM05D007974 ORTHO05D010062 1.6e-23 113.2 95 52.6
MBI12_g15161_MAGBIO Magnolia biondii HOM05D007974 ORTHO05D010062 1.6e-23 113.2 99 50.5
Nn6g34222 Nelumbo nucifera HOM05D007974 ORTHO05D010062 1.6e-23 113.2 120 45.8
Phvul.007G067200 Phaseolus vulgaris HOM05D007974 ORTHO05D010062 1.6e-23 113.2 100 50.0
PGSC0003DMG400014320 Solanum tuberosum HOM05D007974 ORTHO05D010062 1.6e-23 113.2 90 57.8
Actinidia32884 Actinidia chinensis HOM05D007974 ORTHO05D010062 2.0e-23 112.8 97 54.6
CAN.G769.6 Capsicum annuum HOM05D007974 ORTHO05D010062 2.0e-23 112.8 92 57.6
Manes.06G145100 Manihot esculenta HOM05D007974 ORTHO05D010062 2.0e-23 112.8 96 53.1
Gorai.008G279400 Gossypium raimondii HOM05D007974 ORTHO05D010062 3.5e-23 112.1 93 53.8
EL10Ac3g05720 Beta vulgaris HOM05D007974 ORTHO05D010062 5.9e-23 111.3 90 55.6
Solyc03g026090.4 Solanum lycopersicum HOM05D007974 ORTHO05D010062 5.9e-23 111.3 90 55.6
Gohir.D12G260800 Gossypium hirsutum HOM05D007974 ORTHO05D010062 1.0e-22 110.5 92 53.3
Prupe.2G291200 Prunus persica HOM05D007974 ORTHO05D010062 1.3e-22 110.2 95 52.6
Sc19g0000020 Simmondsia chinensis HOM05D007974 ORTHO05D010062 1.7e-22 109.8 100 52.0
Sopen03g004930 Solanum pennellii HOM05D007974 ORTHO05D010062 1.7e-22 109.8 90 55.6
Sc19g0001640 Simmondsia chinensis HOM05D007974 ORTHO05D010062 2.2e-22 109.4 100 52.0
Potri.012G139700 Populus trichocarpa HOM05D007974 ORTHO05D010062 2.9e-22 109.0 97 48.5
VMungo0720G1552 Vigna mungo HOM05D007974 ORTHO05D010062 2.9e-22 109.0 96 47.9
Cpa.g.sc107.23 Carica papaya HOM05D007974 ORTHO05D010062 6.5e-22 107.8 91 50.5
MD01G1197800 Malus domestica HOM05D007974 ORTHO05D010062 6.5e-22 107.8 96 51.0
Cfa008290 Carpinus fangiana HOM05D007974 ORTHO05D010062 3.2e-21 105.5 91 52.7
Glyma.20G156300 Glycine max HOM05D007974 ORTHO05D010062 4.2e-21 105.1 90 51.1
arahy.Tifrunner.gnm1.ann1.G5CYYB Arachis hypogaea HOM05D007974 ORTHO05D010062 2.7e-20 102.4 93 50.5
Sabra12G0104700 Salix brachista HOM05D000659 ORTHO05D000505 3.6e-20 102.1 87 49.4
ATR0757G011 Amborella trichopoda HOM05D007974 ORTHO05D010062 4.7e-20 101.7 91 46.2
TPR.G17393 Trifolium pratense HOM05D007974 ORTHO05D010062 4.7e-20 101.7 90 50.0
LjContig00238g0026064 Lotus japonicus HOM05D007974 ORTHO05D010062 2.3e-19 99.4 89 48.3
Glyma.10G238250 Glycine max HOM05D007974 ORTHO05D010062 3.0e-19 99.0 87 50.6
PGR142G2606 Punica granatum HOM05D007974 ORTHO05D010062 5.2e-19 98.2 89 49.4
FAN10G0057 Fragaria x ananassa HOM05D007974 ORTHO05D010062 8.8e-19 97.4 91 46.2
FvH4_7g29100 Fragaria vesca HOM05D007974 ORTHO05D010062 2.0e-18 96.3 91 46.2
FAN03G0127 Fragaria x ananassa HOM05D007974 ORTHO05D010062 2.6e-18 95.9 91 47.3
RcHm_v2.0_Chr1g0376841 Rosa chinensis HOM05D007974 ORTHO05D010062 3.4e-18 95.5 91 48.4
FAN06G2079 Fragaria x ananassa HOM05D007974 ORTHO05D010062 4.4e-18 95.1 91 46.2
Medtr1g101320 Medicago truncatula HOM05D007974 ORTHO05D010062 4.4e-18 95.1 89 50.6
Lsat_1_v5_gn_2_131621 Lactuca sativa HOM05D007974 ORTHO05D010062 7.5e-18 94.4 100 49.0
FAN03G1543 Fragaria x ananassa HOM05D007974 ORTHO05D010062 1.8e-16 89.7 91 45.1
Gohir.D11G325151 Gossypium hirsutum HOM05D007974 ORTHO05D010062 6.5e-14 81.3 76 47.4
Actinidia03112 Actinidia chinensis HOM05D007974 ORTHO05D010062 1.4e-11 73.6 104 40.4
Potri.015G142100 Populus trichocarpa HOM05D007974 ORTHO05D010062 5.4e-08 61.6 57 40.4
Medtr7g072900 Medicago truncatula HOM05D000275 ORTHO05D000181 2.0e-07 59.7 92 31.5
Medtr7g072993 Medicago truncatula HOM05D000275 ORTHO05D000181 2.7e-07 59.3 92 32.6
CSS0044170 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 5.9e-07 58.2 93 30.1
Cpa.g.sc20.157 Carica papaya HOM05D000275 ORTHO05D000181 1.3e-06 57.0 114 29.8
CsaV3_4G027160 Cucumis sativus L. HOM05D000275 ORTHO05D000181 1.7e-06 56.6 98 30.6
Medtr7g073130 Medicago truncatula HOM05D000275 ORTHO05D000181 3.8e-06 55.5 91 31.9
SGA_v2.0_scaffold59G20687 Striga asiatica HOM05D000275 ORTHO05D000181 3.8e-06 55.5 92 32.6
Lalb_Chr12g0203591 Lupinus albus HOM05D006508 ORTHO05D003378 5.0e-06 55.1 92 29.3
Migut.H00915 Erythranthe guttata HOM05D000275 ORTHO05D000181 6.6e-06 54.7 97 27.8


User provided reference genes

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