Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g25060 Schrenkiella parvula HOM05D002266 ORTHO05D010337 8.2e-233 810.1 423 100.0
Thhalv10005642m.g Eutrema salsugineum HOM05D002266 ORTHO05D010337 1.8e-195 686.0 423 86.5
AL8G38630 Arabidopsis lyrata HOM05D002266 ORTHO05D010337 2.0e-194 682.6 425 86.1
AT5G61865 Arabidopsis thaliana HOM05D002266 ORTHO05D010337 8.6e-190 667.2 424 84.7
CARHR275630 Cardamine hirsuta HOM05D002266 ORTHO05D010337 1.9e-189 666.0 423 82.7
Carub.0008s2256 Capsella rubella HOM05D002266 ORTHO05D010337 7.3e-189 664.1 422 82.9
A06p28540 Brassica napus HOM05D002266 ORTHO05D010337 9.2e-184 647.1 423 81.8
BcaC01g02442 Brassica carinata HOM05D002266 ORTHO05D010337 2.7e-183 645.6 423 81.1
C03p65250 Brassica napus HOM05D002266 ORTHO05D010337 2.7e-183 645.6 423 81.1
BolC3t18778H Brassica oleracea HOM05D002266 ORTHO05D010337 2.7e-183 645.6 423 81.1
BcaB02g09608 Brassica carinata HOM05D002266 ORTHO05D010337 1.2e-180 636.7 420 82.1
BraA06t25800Z Brassica rapa HOM05D002266 ORTHO05D010337 1.6e-180 636.3 417 82.0
Aa31LG11G1630 Aethionema arabicum HOM05D002266 ORTHO05D010337 2.1e-143 513.1 421 65.6
THA.LOC104818284 Tarenaya hassleriana HOM05D002266 ORTHO05D010337 3.3e-96 356.3 434 49.3
Gohir.A07G046600 Gossypium hirsutum HOM05D002266 ORTHO05D010337 5.6e-72 275.8 407 41.5
Duzib205G1981 Durio zibethinus HOM05D002266 ORTHO05D010337 8.9e-70 268.5 402 41.8
Gohir.D07G050900 Gossypium hirsutum HOM05D002266 ORTHO05D010337 1.5e-69 267.7 407 41.0
Gorai.001G054000 Gossypium raimondii HOM05D002266 ORTHO05D010337 1.5e-69 267.7 407 41.0
Hma1.2p1_0452F.1_g155980 Hydrangea macrophylla HOM05D002266 ORTHO05D010337 2.9e-68 263.5 407 41.3
Prupe.5G140800 Prunus persica HOM05D002266 ORTHO05D010337 3.0e-65 253.4 403 43.4
Sabra12G0079800 Salix brachista HOM05D002266 ORTHO05D010337 3.9e-65 253.1 402 41.8
Manes.14G044300 Manihot esculenta HOM05D002266 ORTHO05D010337 8.6e-65 251.9 405 40.2
Atru.chr6.1922 Acer truncatum HOM05D002266 ORTHO05D010337 1.5e-64 251.1 439 41.0
Atru.chr6.1924 Acer truncatum HOM05D002266 ORTHO05D010337 1.5e-64 251.1 439 41.0
Potri.012G108900 Populus trichocarpa HOM05D002266 ORTHO05D010337 3.3e-64 250.0 392 41.6
Ciclev10033782m.g Citrus clementina HOM05D002266 ORTHO05D010337 4.3e-64 249.6 406 39.7
Thecc.03G141000 Theobroma cacao HOM05D002266 ORTHO05D010337 2.8e-63 246.9 430 39.3
Lj5C86T8 Lonicera japonica HOM05D002266 ORTHO05D010337 6.2e-63 245.7 410 39.8
QL10p000420 Quercus lobata HOM05D002266 ORTHO05D010337 8.1e-63 245.4 396 40.9
Rhsim08G0198000 Rhododendron simsii HOM05D002266 ORTHO05D010337 1.1e-62 245.0 388 38.9
Migut.D01181 Erythranthe guttata HOM05D002266 ORTHO05D010337 7.6e-61 238.8 419 38.7
TWI23G1291 Tripterygium wilfordii HOM05D002266 ORTHO05D010337 2.9e-60 236.9 400 39.8
COL.COLO4_37262 Corchorus olitorius HOM05D002266 ORTHO05D010337 1.1e-59 235.0 308 45.1
MD14G1146800 Malus domestica HOM05D002266 ORTHO05D010337 1.1e-59 235.0 365 41.9
RcHm_v2.0_Chr7g0188601 Rosa chinensis HOM05D002266 ORTHO05D010337 6.0e-58 229.2 409 39.4
DCAR_025647 Daucus carota HOM05D002266 ORTHO05D010337 8.7e-57 225.3 405 38.0
FvH4_5g09640 Fragaria vesca HOM05D002266 ORTHO05D010337 3.3e-56 223.4 405 38.0
HanXRQChr05g0155381 Helianthus annuus HOM05D002266 ORTHO05D010337 8.1e-55 218.8 407 35.9
Cpa.g.sc13.178 Carica papaya HOM05D002266 ORTHO05D010337 6.9e-54 215.7 267 45.3
FAN04G1258 Fragaria x ananassa HOM05D002266 ORTHO05D010337 6.9e-54 215.7 400 36.8
Solyc12g042340.2 Solanum lycopersicum HOM05D002266 ORTHO05D010337 1.5e-53 214.5 406 35.2
Sopen12g021270 Solanum pennellii HOM05D002266 ORTHO05D010337 2.6e-53 213.8 345 36.5
SGA_v2.0_scaffold74G24650 Striga asiatica HOM05D002266 ORTHO05D010337 4.4e-53 213.0 416 35.1
Cc04_g05840 Coffea canephora HOM05D002266 ORTHO05D010337 2.2e-52 210.7 401 36.2
Nitab4.5_0002584g0010 Nicotiana tabacum HOM05D002266 ORTHO05D010337 4.2e-51 206.5 394 36.8
Nitab4.5_0008403g0020 Nicotiana tabacum HOM05D002266 ORTHO05D010337 2.1e-50 204.1 389 36.0
FAN18G2616 Fragaria x ananassa HOM05D002266 ORTHO05D010337 5.6e-48 196.1 372 37.1
Aqoxy3G02681 Aquilegia oxysepala HOM05D002266 ORTHO05D010337 6.2e-47 192.6 420 32.4
Peaxi162Scf00135g01413 Petunia axillaris HOM05D002266 ORTHO05D010337 5.3e-46 189.5 331 36.0
Lsat_1_v5_gn_5_10020 Lactuca sativa HOM05D002266 ORTHO05D010337 1.5e-45 188.0 400 34.0
unitig_747.g21318 Utricularia gibba HOM05D002266 ORTHO05D010337 9.9e-45 185.3 333 35.7
SalBow1G8312 Salvia bowleyana HOM05D002266 ORTHO05D010337 2.2e-44 184.1 416 33.4
Oeu013660.2 Olea europaea HOM05D002266 ORTHO05D010337 2.9e-44 183.7 347 36.6
PSO339G3582 Papaver somniferum HOM05D002266 ORTHO05D010337 3.8e-44 183.3 401 31.4
FAN13G2170 Fragaria x ananassa HOM05D002266 ORTHO05D010337 2.7e-42 177.2 372 34.9
MBI07_g35979_MAGBIO Magnolia biondii HOM05D002266 ORTHO05D010337 6.7e-41 172.6 323 36.2
Actinidia25516 Actinidia chinensis HOM05D002266 ORTHO05D010337 2.0e-37 161.0 312 34.3
Dinv13716 Davidia involucrata HOM05D002266 ORTHO05D010337 6.4e-36 156.0 196 45.4
FAN08G1259 Fragaria x ananassa HOM05D002266 ORTHO05D010337 3.5e-34 150.2 371 32.9
PGSC0003DMG400014448 Solanum tuberosum HOM05D002266 ORTHO05D010337 1.6e-26 124.8 183 35.5
SEGI_02612 Sequoiadendron giganteum HOM05D002266 ORTHO05D000002 1.0e-20 105.5 412 25.5
Cpa.g.sc13.177 Carica papaya HOM05D002266 ORTHO05D010337 1.4e-09 68.6 185 34.6
Sabra13G0033600 Salix brachista HOM05D002266 ORTHO05D010337 2.4e-06 57.8 77 44.2


User provided reference genes

Program Settings