Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 1.7e-214 749.2 420 100.0
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 2.3e-182 642.5 420 84.3
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 2.3e-182 642.5 420 84.3
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 1.8e-179 632.9 422 83.6
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 1.8e-179 632.9 422 83.6
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 3.4e-178 628.6 419 85.7
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 1.3e-177 626.7 420 83.3
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 1.5e-173 613.2 422 85.1
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 1.0e-171 607.1 426 85.9
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 4.9e-169 598.2 421 84.6
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 4.6e-167 591.7 421 84.3
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 4.3e-165 585.1 418 83.7
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 2.8e-164 582.4 421 83.6
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 1.1e-163 580.5 412 82.8
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 1.4e-163 580.1 418 84.2
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 6.8e-163 577.8 421 83.4
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 6.8e-163 577.8 420 83.8
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 2.6e-162 575.9 421 83.1
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 1.0e-150 537.3 427 74.0
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.3e-134 483.0 429 68.5
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 4.3e-133 478.8 425 68.7
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 1.3e-132 477.2 410 65.9
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 4.5e-130 468.8 408 67.9
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 5.8e-130 468.4 414 62.1
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 2.2e-129 466.5 409 62.3
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 2.9e-129 466.1 409 62.3
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 4.9e-129 465.3 407 63.1
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 4.2e-128 462.2 417 73.1
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 1.2e-127 460.7 411 66.2
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 3.5e-127 459.1 404 67.8
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 4.6e-127 458.8 407 61.9
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 4.6e-127 458.8 418 67.0
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 3.0e-126 456.1 408 64.2
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 3.0e-126 456.1 413 67.1
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 3.9e-126 455.7 410 67.1
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 1.1e-125 454.1 421 65.3
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 1.9e-125 453.4 407 67.8
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 3.3e-125 452.6 395 66.6
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 7.4e-125 451.4 411 63.0
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 2.8e-124 449.5 431 55.7
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 3.7e-124 449.1 405 62.5
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 3.7e-124 449.1 411 65.2
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 4.8e-124 448.7 411 66.4
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 6.2e-124 448.4 416 65.4
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 1.1e-123 447.6 418 64.6
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 1.4e-123 447.2 407 59.7
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 2.4e-123 446.4 420 68.6
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 9.0e-123 444.5 415 60.2
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 1.2e-122 444.1 430 64.0
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 1.2e-122 444.1 409 65.8
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 1.5e-122 443.7 423 63.8
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 2.6e-122 443.0 404 63.6
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 3.4e-122 442.6 414 65.2
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 7.6e-122 441.4 409 67.2
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.0e-121 441.0 424 61.1
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.0e-121 441.0 406 63.1
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 2.2e-121 439.9 417 67.9
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 6.5e-121 438.3 409 65.3
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 6.5e-121 438.3 422 64.2
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 1.1e-120 437.6 419 69.9
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 1.4e-120 437.2 413 60.5
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 4.2e-120 435.6 417 63.8
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 5.5e-120 435.3 409 63.1
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 1.2e-119 434.1 419 63.5
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 1.2e-119 434.1 432 58.6
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 1.6e-119 433.7 423 58.9
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 3.5e-119 432.6 422 58.8
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 4.6e-119 432.2 439 62.4
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 6.0e-119 431.8 419 60.1
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 6.0e-119 431.8 397 66.0
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 7.9e-119 431.4 403 65.0
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 1.3e-118 430.6 465 54.0
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 3.0e-118 429.5 430 61.9
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 3.0e-118 429.5 405 67.2
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 1.1e-117 427.6 406 62.8
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 1.5e-117 427.2 412 56.8
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 1.9e-117 426.8 401 60.1
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 5.7e-117 425.2 406 63.1
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 1.6e-116 423.7 421 62.7
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 4.8e-116 422.2 402 63.2
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 2.4e-115 419.9 413 59.3
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 1.2e-114 417.5 381 65.6
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 2.6e-114 416.4 353 64.9
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 4.5e-114 415.6 407 57.0
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.7e-113 413.7 406 56.2
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 4.2e-112 409.1 379 63.9
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 7.2e-112 408.3 411 58.9
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 2.1e-111 406.8 419 58.0
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 7.9e-111 404.8 414 57.7
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 1.8e-110 403.7 420 54.0
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 3.0e-110 402.9 370 70.0
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 3.9e-110 402.5 355 65.1
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 8.8e-110 401.4 419 56.6
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 5.7e-109 398.7 403 66.3
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 9.7e-109 397.9 417 55.9
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 1.7e-108 397.1 388 61.9
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.4e-107 394.0 354 59.0
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 9.1e-107 391.3 362 66.0
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 2.1e-103 380.2 400 56.2
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 6.1e-103 378.6 380 55.8
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 6.1e-103 378.6 355 64.5
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 1.8e-102 377.1 395 55.4
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 3.0e-102 376.3 322 66.1
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 3.9e-102 375.9 410 57.8
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.7e-102 375.2 410 57.6
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 4.4e-101 372.5 416 55.8
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 5.7e-101 372.1 405 55.1
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 9.7e-101 371.3 413 57.1
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 9.7e-101 371.3 413 57.1
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.8e-99 367.1 407 55.0
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 5.3e-99 365.5 355 55.5
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 1.5e-98 364.0 314 69.1
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.8e-97 359.4 424 52.6
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 2.1e-95 353.6 352 62.2
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 1.4e-94 350.9 364 60.7
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 2.3e-94 350.1 358 53.4
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 5.9e-90 335.5 397 54.4
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 3.0e-86 323.2 175 84.6
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 7.7e-82 308.5 334 50.9
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 3.8e-81 306.2 160 85.6
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 8.5e-81 305.1 401 46.9
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 2.5e-80 303.5 355 47.6
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 2.7e-79 300.1 430 44.4
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 8.0e-79 298.5 350 48.9
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 3.7e-76 289.7 369 45.0
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 1.4e-75 287.7 381 48.6
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 2.9e-73 280.0 327 46.8
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 3.6e-63 246.5 131 84.7
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 1.5e-61 241.1 294 60.9
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 4.4e-61 239.6 299 58.5
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 9.5e-56 221.9 116 86.2
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 1.4e-51 208.0 114 82.5
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 9.2e-51 205.3 303 47.9
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 8.1e-47 192.2 113 74.3
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.4e-45 186.4 174 52.9
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 7.5e-45 185.7 290 45.5
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 2.5e-40 170.6 92 81.5
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 5.6e-40 169.5 386 32.9
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 5.1e-33 146.4 167 53.3
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 7.6e-29 132.5 116 62.9
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 1.0e-25 122.1 319 29.5
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 8.1e-23 112.5 66 81.8
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 4.5e-13 80.1 39 89.7
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 4.5e-13 80.1 68 55.9


User provided reference genes

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