Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g24670 Schrenkiella parvula HOM05D010116 ORTHO05D012794 4.4e-148 528.1 298 100.0
Thhalv10005323m.g Eutrema salsugineum HOM05D010116 ORTHO05D012794 3.4e-84 315.8 306 66.7
BcaC06g33240 Brassica carinata HOM05D010116 ORTHO05D012794 6.1e-81 305.1 296 68.2
BolC7t45041H Brassica oleracea HOM05D010116 ORTHO05D012794 6.1e-81 305.1 296 68.2
C07p45180 Brassica napus HOM05D010116 ORTHO05D012794 5.0e-75 285.4 295 65.1
BraA03t13834Z Brassica rapa HOM05D010116 ORTHO05D012794 1.9e-74 283.5 295 65.8
A03p47070 Brassica napus HOM05D010116 ORTHO05D012794 7.4e-71 271.6 293 63.5
BcaC06g33152 Brassica carinata HOM05D010116 ORTHO05D012794 4.1e-69 265.8 292 64.4
AL8G38160 Arabidopsis lyrata HOM05D010116 ORTHO05D012794 2.0e-60 236.9 314 57.6
BolC2t12210H Brassica oleracea HOM05D010116 ORTHO05D012794 2.6e-60 236.5 242 57.9
AT5G61470 Arabidopsis thaliana HOM05D010116 ORTHO05D012794 3.2e-58 229.6 312 52.6
BcaB07g29827 Brassica carinata HOM05D010116 ORTHO05D012794 1.8e-56 223.8 266 56.0
BcaC03g18087 Brassica carinata HOM05D010116 ORTHO05D012794 5.7e-55 218.8 228 57.9
A02p41620 Brassica napus HOM05D010116 ORTHO05D012794 4.5e-52 209.1 242 55.4
Carub.0008s2216 Capsella rubella HOM05D010116 ORTHO05D012794 1.0e-51 208.0 309 49.8
BraA02t09104Z Brassica rapa HOM05D010116 ORTHO05D012794 1.6e-49 200.7 242 52.5
C02p61560 Brassica napus HOM05D010116 ORTHO05D012794 3.6e-49 199.5 242 52.1
CARHR275240 Cardamine hirsuta HOM05D010116 ORTHO05D012794 1.5e-47 194.1 298 49.3
BcaC06g33241 Brassica carinata HOM05D010116 ORTHO05D012794 5.4e-29 132.5 103 68.9
BcaC03g18086 Brassica carinata HOM05D010116 ORTHO05D012794 2.1e-25 120.6 129 58.1
Manes.06G133500 Manihot esculenta HOM05D001867 ORTHO05D001708 1.4e-13 81.3 290 24.5
Sabra01G0096900 Salix brachista HOM05D001867 ORTHO05D001708 6.6e-11 72.4 281 27.0
PGR042G0355 Punica granatum HOM05D001867 ORTHO05D001708 1.1e-10 71.6 244 24.6
Thhalv10009894m.g Eutrema salsugineum HOM05D001867 ORTHO05D001708 4.3e-10 69.7 237 27.8
CiPaw.03G020600 Carya illinoinensis HOM05D001867 ORTHO05D001708 9.5e-10 68.6 284 23.6
Eucgr.A02901 Eucalyptus grandis HOM05D001867 ORTHO05D001708 9.5e-10 68.6 255 24.3
CDE11G0847 Ceratophyllum demersum HOM05D000174 ORTHO05D001526 2.1e-09 67.4 246 26.4
HPP92_007425 Vanilla planifolia HOM05D001867 ORTHO05D001708 2.1e-09 67.4 250 24.0
Aa31LG1G11350 Aethionema arabicum HOM05D001867 ORTHO05D001708 2.8e-09 67.0 240 26.7
COL.COLO4_14101 Corchorus olitorius HOM05D001867 ORTHO05D001708 2.8e-09 67.0 247 31.2
Solyc01g090840.3 Solanum lycopersicum HOM05D001867 ORTHO05D001708 4.7e-09 66.2 256 27.0
Lj7P537T47 Lonicera japonica HOM05D001867 ORTHO05D001708 1.4e-08 64.7 251 25.1
Potri.001G125900 Populus trichocarpa HOM05D001867 ORTHO05D001708 1.4e-08 64.7 272 23.9
Dinv21642 Davidia involucrata HOM05D001867 ORTHO05D001708 1.8e-08 64.3 252 26.6
Lalb_Chr13g0302941 Lupinus albus HOM05D001658 ORTHO05D001406 1.8e-08 64.3 260 23.5
AL5G42890 Arabidopsis lyrata HOM05D001867 ORTHO05D001708 3.1e-08 63.5 273 25.6
Cpa.g.sc111.55 Carica papaya HOM05D001867 ORTHO05D001708 4.0e-08 63.2 253 27.3
Duzib068G0792 Durio zibethinus HOM05D001867 ORTHO05D001708 5.2e-08 62.8 249 24.5
HanXRQChr04g0101431 Helianthus annuus HOM05D001658 ORTHO05D001406 5.2e-08 62.8 284 26.4
PGSC0003DMG400026020 Solanum tuberosum HOM05D001867 ORTHO05D001708 5.2e-08 62.8 272 24.3
Medtr4g027440 Medicago truncatula HOM05D001867 ORTHO05D001708 6.8e-08 62.4 264 27.3
Psat5g211760 Pisum sativum HOM05D001658 ORTHO05D001406 6.8e-08 62.4 266 25.6
AT3G60580 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 1.2e-07 61.6 250 24.8
QL09p005291 Quercus lobata HOM05D001867 ORTHO05D001708 1.2e-07 61.6 256 24.2
SGA_v2.0_scaffold153G36965 Striga asiatica HOM05D001867 ORTHO05D001708 1.2e-07 61.6 237 24.5
Ciclev10007101m.g Citrus clementina HOM05D001867 ORTHO05D001708 1.5e-07 61.2 262 24.0
Gohir.D07G046100 Gossypium hirsutum HOM05D000174 ORTHO05D001708 1.5e-07 61.2 243 25.5
MD01G1182000 Malus domestica HOM05D001867 ORTHO05D001708 2.0e-07 60.8 252 23.8
Manes.14G036900 Manihot esculenta HOM05D001867 ORTHO05D001708 2.0e-07 60.8 266 24.1
CARHR170970 Cardamine hirsuta HOM05D001867 ORTHO05D001708 2.6e-07 60.5 277 25.3
Thecc.03G153500 Theobroma cacao HOM05D001867 ORTHO05D001708 2.6e-07 60.5 271 25.8
A09p52800 Brassica napus HOM05D001867 ORTHO05D001708 4.4e-07 59.7 250 24.8
Eucgr.K00165 Eucalyptus grandis HOM05D001867 ORTHO05D001708 4.4e-07 59.7 251 22.3
Nitab4.5_0007709g0010 Nicotiana tabacum HOM05D001867 ORTHO05D001708 4.4e-07 59.7 265 24.5
BraA09t40712Z Brassica rapa HOM05D001867 ORTHO05D001708 7.6e-07 58.9 250 24.8
Gorai.001G049300 Gossypium raimondii HOM05D000174 ORTHO05D001708 9.9e-07 58.5 243 25.5
Phvul.010G071300 Phaseolus vulgaris HOM05D001867 ORTHO05D001708 9.9e-07 58.5 273 25.3
Cc02_g24700 Coffea canephora HOM05D001867 ORTHO05D001708 1.3e-06 58.2 252 23.4
Glyma.09G230200 Glycine max HOM05D001867 ORTHO05D001708 1.3e-06 58.2 264 23.5
MD07G1252200 Malus domestica HOM05D001867 ORTHO05D001708 1.3e-06 58.2 248 23.4
Carub.0004s2771 Capsella rubella HOM05D001867 ORTHO05D001708 1.7e-06 57.8 260 24.6
TWI59G1025 Tripterygium wilfordii HOM05D000174 ORTHO05D001526 2.2e-06 57.4 263 25.9
AT1G02030 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 2.9e-06 57.0 244 25.4
Cc05_g15710 Coffea canephora HOM05D000174 ORTHO05D000630 2.9e-06 57.0 298 23.5
DCAR_015875 Daucus carota HOM05D001867 ORTHO05D001708 2.9e-06 57.0 265 28.7
HPP92_020442 Vanilla planifolia HOM05D001658 ORTHO05D001406 2.9e-06 57.0 327 22.0
BcaB02g07404 Brassica carinata HOM05D001867 ORTHO05D001708 3.8e-06 56.6 254 24.0
CiPaw.04G013500 Carya illinoinensis HOM05D001867 ORTHO05D001708 3.8e-06 56.6 264 22.0
TPR.G4979 Trifolium pratense HOM05D001867 ORTHO05D001708 3.8e-06 56.6 267 25.5
BcaC07g40579 Brassica carinata HOM05D001867 ORTHO05D001708 4.9e-06 56.2 243 24.3
Prupe.2G275700 Prunus persica HOM05D001867 ORTHO05D001708 4.9e-06 56.2 249 23.7
Rhsim07G0031900 Rhododendron simsii HOM05D000174 ORTHO05D001526 4.9e-06 56.2 263 27.0
PGSC0003DMG400022147 Solanum tuberosum HOM05D008543 ORTHO05D000630 4.9e-06 56.2 275 22.5
TWI81G0627 Tripterygium wilfordii HOM05D001658 ORTHO05D001406 4.9e-06 56.2 260 23.1
Zm00001eb020300 Zea mays HOM05D000174 ORTHO05D001526 4.9e-06 56.2 254 25.6
BcaC08g45077 Brassica carinata HOM05D001867 ORTHO05D001708 6.4e-06 55.8 246 25.6
C08p35530 Brassica napus HOM05D001867 ORTHO05D001708 6.4e-06 55.8 262 27.1
ECA247G4074 Erigeron canadensis HOM05D001658 ORTHO05D001406 6.4e-06 55.8 319 22.9
Lj3g0005427 Lotus japonicus HOM05D001867 ORTHO05D001708 6.4e-06 55.8 266 25.9
Aa31LG1G26680 Aethionema arabicum HOM05D001867 ORTHO05D001708 8.4e-06 55.5 267 22.8
C06p26860 Brassica napus HOM05D001867 ORTHO05D001708 8.4e-06 55.5 246 25.6
BolC6t37860H Brassica oleracea HOM05D001867 ORTHO05D001708 8.4e-06 55.5 246 25.6
HanXRQChr02g0042561 Helianthus annuus HOM05D000174 ORTHO05D001406 8.4e-06 55.5 291 24.4


User provided reference genes

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