Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g24510 Schrenkiella parvula HOM05D002953 ORTHO05D003249 2.4e-137 492.3 264 100.0
AL8G37940 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 1.2e-104 383.6 264 78.0
AT5G61280 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 4.7e-101 371.7 264 76.9
CARHR275030 Cardamine hirsuta HOM05D002953 ORTHO05D003249 2.0e-99 366.3 264 76.9
Thhalv10004785m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 1.9e-94 349.7 264 71.6
BcaC06g33225 Brassica carinata HOM05D002953 ORTHO05D003249 4.0e-92 342.0 230 78.3
C07p44950 Brassica napus HOM05D000627 ORTHO05D000365 8.8e-92 340.9 252 74.2
BolC7t45018H Brassica oleracea HOM05D000627 ORTHO05D000365 8.8e-92 340.9 252 74.2
BraA03t13810Z Brassica rapa HOM05D000627 ORTHO05D000365 1.1e-89 334.0 251 72.9
BcaC06g33164 Brassica carinata HOM05D002953 ORTHO05D003249 9.2e-81 304.3 234 72.2
Carub.0008s2196 Capsella rubella HOM05D002953 ORTHO05D003249 4.5e-80 302.0 264 67.4
BcaC06g33224 Brassica carinata HOM05D002953 ORTHO05D000365 8.6e-79 297.7 239 71.1
A03p46900 Brassica napus HOM05D000627 ORTHO05D000365 2.5e-78 296.2 262 64.9
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 7.1e-57 224.9 272 51.8
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 3.9e-31 139.4 264 37.9
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 6.6e-31 138.7 267 39.0
Atru.chr9.285 Acer truncatum HOM05D002953 ORTHO05D003249 4.3e-30 136.0 283 37.8
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 2.1e-29 133.7 247 38.9
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 3.6e-29 132.9 243 40.3
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 3.6e-29 132.9 241 39.8
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 4.8e-29 132.5 213 37.6
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 4.8e-29 132.5 222 41.4
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 9.0e-28 128.3 229 38.0
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 2.6e-27 126.7 228 37.7
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 3.4e-27 126.3 233 35.6
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 5.8e-27 125.6 228 37.7
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 7.6e-27 125.2 236 39.8
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 9.9e-27 124.8 213 39.0
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 1.3e-26 124.4 227 38.3
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 2.9e-26 123.2 222 37.4
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 3.8e-26 122.9 283 34.6
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 3.8e-26 122.9 261 34.1
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 4.9e-26 122.5 230 37.4
Sed0013431 Sechium edule HOM05D002953 ORTHO05D003249 1.4e-25 120.9 278 32.7
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 1.9e-25 120.6 216 38.9
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 2.4e-25 120.2 224 36.6
Glyma.06G199700 Glycine max HOM05D002953 ORTHO05D003249 3.2e-25 119.8 227 35.2
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 4.2e-25 119.4 228 39.0
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 7.1e-25 118.6 221 37.1
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 7.1e-25 118.6 217 37.8
Gorai.008G196300 Gossypium raimondii HOM05D002953 ORTHO05D003249 9.3e-25 118.2 226 36.7
Gohir.A12G180300 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.2e-24 117.9 236 36.0
Gohir.D12G183000 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.2e-24 117.9 226 36.7
Ciclev10024374m.g Citrus clementina HOM05D002953 ORTHO05D003249 1.6e-24 117.5 217 36.4
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 2.1e-24 117.1 238 35.3
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 2.7e-24 116.7 203 38.4
Rhsim12G0152800 Rhododendron simsii HOM05D002953 ORTHO05D003249 1.8e-23 114.0 218 38.5
Eucgr.B00564 Eucalyptus grandis HOM05D002953 ORTHO05D003249 2.3e-23 113.6 272 36.8
EL10Ac5g11089 Beta vulgaris HOM05D002953 ORTHO05D003249 3.0e-23 113.2 269 32.7
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 3.0e-23 113.2 271 32.1
Haze_07674 Corylus avellana HOM05D002953 ORTHO05D003249 3.0e-23 113.2 212 36.8
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 8.7e-23 111.7 213 36.6
Ah.11g048070 Amaranthus hybridus HOM05D002953 ORTHO05D003249 1.1e-22 111.3 226 36.3
Peaxi162Scf00013g00538 Petunia axillaris HOM05D002953 ORTHO05D003249 1.5e-22 110.9 214 37.4
TWI81G0838 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 1.5e-22 110.9 226 33.6
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 2.5e-22 110.2 231 37.7
Oeu032216.1 Olea europaea HOM05D002953 ORTHO05D003249 3.3e-22 109.8 212 37.3
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 4.3e-22 109.4 223 36.3
Rhsim12G0152900 Rhododendron simsii HOM05D002953 ORTHO05D003249 4.3e-22 109.4 218 37.6
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 4.3e-22 109.4 224 35.7
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 4.3e-22 109.4 293 34.1
arahy.Tifrunner.gnm1.ann1.52HBJM Arachis hypogaea HOM05D002953 ORTHO05D003249 9.6e-22 108.2 223 37.7
arahy.Tifrunner.gnm1.ann1.90GC30 Arachis hypogaea HOM05D002953 ORTHO05D003249 9.6e-22 108.2 265 30.2
Sopen06g026890 Solanum pennellii HOM05D002953 ORTHO05D003249 9.6e-22 108.2 213 36.2
AUR62008487 Chenopodium quinoa HOM05D002953 ORTHO05D003249 2.1e-21 107.1 266 32.3
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 3.7e-21 106.3 325 30.2
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 8.1e-21 105.1 296 31.1
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.4e-20 104.4 223 35.4
Nitab4.5_0001688g0010 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.8e-20 104.0 213 37.6
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 3.1e-20 103.2 214 37.9
Nitab4.5_0006673g0090 Nicotiana tabacum HOM05D002953 ORTHO05D003249 5.3e-20 102.4 130 46.2
SalBow5G1999 Salvia bowleyana HOM05D002953 ORTHO05D003249 5.3e-20 102.4 209 34.4
Migut.I00340 Erythranthe guttata HOM05D002953 ORTHO05D003249 6.9e-20 102.1 129 46.5
FAN18G4303 Fragaria x ananassa HOM05D000627 ORTHO05D000365 9.0e-20 101.7 222 37.4
FAN13G1454 Fragaria x ananassa HOM05D000627 ORTHO05D000365 2.0e-19 100.5 218 37.6
FAN08G1545 Fragaria x ananassa HOM05D002953 ORTHO05D000365 1.0e-18 98.2 219 37.9
Duzib068G0795 Durio zibethinus HOM05D002953 ORTHO05D003249 1.7e-18 97.4 108 44.4
HanXRQChr02g0035641 Helianthus annuus HOM05D002953 ORTHO05D003249 1.7e-18 97.4 260 31.5
MD14G1208100 Malus domestica HOM05D002953 ORTHO05D003249 4.9e-18 95.9 225 35.6
Sc10g0009790 Simmondsia chinensis HOM05D002953 ORTHO05D003249 8.4e-18 95.1 216 33.3
Lalb_Chr13g0302991 Lupinus albus HOM05D002953 ORTHO05D003249 1.9e-17 94.0 266 32.7
TAR371G0440 Trochodendron aralioides HOM05D002953 ORTHO05D003249 7.1e-17 92.0 326 30.1
TAR629G0224 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.6e-16 90.9 216 32.9
ECA232G4309 Erigeron canadensis HOM05D002953 ORTHO05D003249 3.5e-16 89.7 210 30.5
HPP92_013438 Vanilla planifolia HOM05D002953 ORTHO05D003249 6.0e-16 89.0 172 34.3
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 7.9e-16 88.6 310 28.7
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 1.0e-15 88.2 320 29.1
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 2.3e-15 87.0 279 26.5
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 3.0e-15 86.7 147 36.7
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 5.1e-15 85.9 284 28.2
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 4.3e-14 82.8 303 26.4
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 7.4e-14 82.0 297 29.0
CDE10G0450 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 9.6e-14 81.6 312 28.5
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 9.6e-14 81.6 292 28.8
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 9.6e-14 81.6 279 25.4
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 1.3e-13 81.3 334 24.3
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 1.3e-13 81.3 270 28.9
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.6e-13 80.9 301 26.6
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 1.6e-13 80.9 107 38.3
unitig_8.g3188 Utricularia gibba HOM05D002953 ORTHO05D003249 1.6e-13 80.9 139 36.0
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 4.8e-13 79.3 105 38.1
Ah.03g139130 Amaranthus hybridus HOM05D002953 ORTHO05D003249 6.3e-13 79.0 106 39.6
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 6.3e-13 79.0 268 26.9
Zm00001eb008420 Zea mays HOM05D002953 ORTHO05D003249 8.2e-13 78.6 107 35.5
Lsat_1_v5_gn_4_110061 Lactuca sativa HOM05D002953 ORTHO05D003249 1.1e-12 78.2 91 46.2
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.1e-12 78.2 272 27.2
Zm00001eb233330 Zea mays HOM05D002953 ORTHO05D003249 1.4e-12 77.8 107 36.4
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 1.8e-12 77.4 241 26.6
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 1.8e-12 77.4 266 28.2
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 2.4e-12 77.0 108 38.0
SGA_v2.0_scaffold16G07764 Striga asiatica HOM05D002953 ORTHO05D003249 3.1e-12 76.6 120 36.7
Glyma.17G076300 Glycine max HOM05D002953 ORTHO05D003249 4.1e-12 76.3 275 29.5
Medtr5g043690 Medicago truncatula HOM05D002953 ORTHO05D003249 4.1e-12 76.3 315 25.4
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 4.1e-12 76.3 368 25.5
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 1.2e-11 74.7 124 36.3
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.5e-11 74.3 107 35.5
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 1.5e-11 74.3 112 37.5
Dinv38775 Davidia involucrata HOM05D000630 ORTHO05D000365 2.0e-11 73.9 184 33.7
Lsat_1_v5_gn_4_12001 Lactuca sativa HOM05D002953 ORTHO05D003249 2.6e-11 73.6 228 28.9
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 3.4e-11 73.2 338 24.9
Sc11g0002310 Simmondsia chinensis HOM05D002953 ORTHO05D003249 5.9e-11 72.4 113 36.3
ECA246G1271 Erigeron canadensis HOM05D000773 ORTHO05D000588 1.0e-10 71.6 189 31.7
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 1.0e-10 71.6 128 32.0
Psat7g135400 Pisum sativum HOM05D002953 ORTHO05D003249 1.0e-10 71.6 108 37.0
Oeu016226.1 Olea europaea HOM05D002953 ORTHO05D003249 1.7e-10 70.9 175 31.4
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 1.7e-10 70.9 134 32.8
Thecc.02G335300 Theobroma cacao HOM05D002953 ORTHO05D003249 2.9e-10 70.1 110 33.6
Eucgr.B03177 Eucalyptus grandis HOM05D002953 ORTHO05D003249 3.8e-10 69.7 184 26.6
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 3.8e-10 69.7 284 26.8
DCAR_030027 Daucus carota HOM05D002953 ORTHO05D003249 5.0e-10 69.3 91 39.6
MD16G1063900 Malus domestica HOM05D002953 ORTHO05D003249 5.0e-10 69.3 170 30.0
Sabra08G0070100 Salix brachista HOM05D002953 ORTHO05D003249 5.0e-10 69.3 136 32.4
CiPaw.05G127400 Carya illinoinensis HOM05D002953 ORTHO05D003249 6.5e-10 68.9 334 24.3
Glyma.07G226700 Glycine max HOM05D002953 ORTHO05D003249 6.5e-10 68.9 108 37.0
Lj6C782G17 Lonicera japonica HOM05D002953 ORTHO05D003249 6.5e-10 68.9 282 26.2
FvH4_4g30432 Fragaria vesca HOM05D002953 ORTHO05D003249 1.1e-09 68.2 296 27.7
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 2.5e-09 67.0 185 30.3
ECA234G3661 Erigeron canadensis HOM05D002953 ORTHO05D003249 3.2e-09 66.6 284 26.1
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 3.2e-09 66.6 115 32.2
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 3.2e-09 66.6 115 32.2
Peaxi162Scf00187g01311 Petunia axillaris HOM05D002953 ORTHO05D003249 3.2e-09 66.6 281 25.6
Solyc04g005470.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 3.2e-09 66.6 293 23.9
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 4.2e-09 66.2 129 34.1
Glyma.02G114300 Glycine max HOM05D002953 ORTHO05D003249 4.2e-09 66.2 223 25.1
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 4.2e-09 66.2 115 32.2
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 5.5e-09 65.9 355 25.4
CDE10G0453 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 5.5e-09 65.9 349 25.2
TAR374G0889 Trochodendron aralioides HOM05D000954 ORTHO05D000822 5.5e-09 65.9 265 26.4
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 7.2e-09 65.5 130 33.1
CANSAT64G0943 Cannabis sativa HOM05D002953 ORTHO05D003249 9.3e-09 65.1 111 30.6
BcaC05g25290 Brassica carinata HOM05D002953 ORTHO05D003249 1.2e-08 64.7 312 24.7
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 1.2e-08 64.7 129 32.6
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 1.2e-08 64.7 129 32.6
Ca_18812_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 1.2e-08 64.7 111 33.3
Potri.008G093300 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.6e-08 64.3 188 28.7
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 1.6e-08 64.3 125 34.4
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 3.6e-08 63.2 111 32.4
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 3.6e-08 63.2 330 25.8
Cpa.g.sc1.99 Carica papaya HOM05D002953 ORTHO05D003249 4.6e-08 62.8 274 25.9
Glyma.05G023400 Glycine max HOM05D002953 ORTHO05D003249 4.6e-08 62.8 275 28.4
Zm00001eb400390 Zea mays HOM05D002953 ORTHO05D003249 4.6e-08 62.8 149 28.9
Ah.02g126500 Amaranthus hybridus HOM05D002953 ORTHO05D003249 6.1e-08 62.4 162 29.6
C08p16380 Brassica napus HOM05D002953 ORTHO05D003249 1.3e-07 61.2 129 30.2
BolC8t49262H Brassica oleracea HOM05D002953 ORTHO05D003249 1.3e-07 61.2 129 30.2
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 1.3e-07 61.2 216 28.2
Nitab4.5_0000334g0300 Nicotiana tabacum HOM05D000954 ORTHO05D000822 1.8e-07 60.8 285 24.9
TPR.G12280 Trifolium pratense HOM05D002953 ORTHO05D003249 3.0e-07 60.1 152 32.2
Glyma.04G164800 Glycine max HOM05D002953 ORTHO05D003249 3.9e-07 59.7 159 30.2
HanXRQChr12g0375351 Helianthus annuus HOM05D002953 ORTHO05D003249 6.7e-07 58.9 273 26.0
PSO017G2547 Papaver somniferum HOM05D002953 ORTHO05D003249 1.5e-06 57.8 367 23.4
VMungo0251G2769 Vigna mungo HOM05D002953 ORTHO05D003249 1.5e-06 57.8 323 24.1
Oeu048151.2 Olea europaea HOM05D002953 ORTHO05D003249 2.5e-06 57.0 96 38.5
FAN12G1055 Fragaria x ananassa HOM05D002953 ORTHO05D003249 3.3e-06 56.6 307 25.4
Glyma.20G027100 Glycine max HOM05D002953 ORTHO05D003249 3.3e-06 56.6 287 25.8
Zm00001eb225120 Zea mays HOM05D002953 ORTHO05D003249 3.3e-06 56.6 106 30.2
SalBow2G2783 Salvia bowleyana HOM05D002953 ORTHO05D003249 5.7e-06 55.8 327 23.9
SalBow2G1905 Salvia bowleyana HOM05D002953 ORTHO05D003249 7.4e-06 55.5 327 23.9
THA.LOC104807117 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 7.4e-06 55.5 193 28.0
Aa31LG4G11550 Aethionema arabicum HOM05D002953 ORTHO05D003249 9.7e-06 55.1 107 27.1
AUR62003129 Chenopodium quinoa HOM05D002953 ORTHO05D003249 9.7e-06 55.1 251 25.5
Haze_11930 Corylus avellana HOM05D002953 ORTHO05D003249 9.7e-06 55.1 321 25.2


User provided reference genes

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