Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.8e-71 273.1 327 100.0
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.0e-68 264.6 327 98.8
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.2e-68 263.5 327 98.8
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 6.5e-68 261.9 327 98.5
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.1e-67 261.2 327 97.9
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.4e-67 260.8 327 97.9
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.5e-67 260.0 327 98.2
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 9.3e-67 258.1 327 97.2
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 1.8e-65 253.8 327 96.6
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 1.8e-65 253.8 327 96.6
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 6.7e-65 251.9 331 96.4
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 3.3e-64 249.6 326 96.0
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 9.6e-64 248.1 336 83.0
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.6e-63 247.3 327 95.4
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.6e-63 247.3 327 95.1
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 6.2e-63 245.4 326 95.4
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 2.4e-62 243.4 343 79.9
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 5.8e-61 238.8 345 78.8
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.6e-61 238.4 327 92.7
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.6e-58 230.7 327 91.1
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.3e-57 227.6 327 88.4
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.8e-57 227.3 327 90.5
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 3.0e-57 226.5 327 91.1
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.7e-57 224.9 327 89.9
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 1.9e-56 223.8 319 92.2
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.3e-56 222.6 329 88.1
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.7e-56 222.2 327 89.6
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.4e-56 221.9 327 89.3
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.4e-54 217.6 321 90.3
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.4e-54 216.9 327 88.4
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 3.1e-54 216.5 321 93.1
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 3.1e-54 216.5 323 91.6
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 4.1e-54 216.1 323 89.8
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 4.1e-54 216.1 315 92.1
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 5.3e-54 215.7 319 90.6
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 5.3e-54 215.7 325 88.9
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 9.0e-54 214.9 321 87.9
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 9.0e-54 214.9 321 88.2
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.5e-53 214.2 328 90.2
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.0e-53 213.8 327 90.2
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 2.0e-53 213.8 327 89.3
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 2.0e-53 213.8 327 89.3
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 2.0e-53 213.8 318 92.5
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.6e-53 213.4 321 91.9
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.6e-53 213.4 327 88.4
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 2.6e-53 213.4 316 92.1
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 3.4e-53 213.0 319 91.8
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 5.9e-53 212.2 323 89.5
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 5.9e-53 212.2 318 87.4
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 7.7e-53 211.8 321 90.3
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.7e-53 211.8 324 88.6
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 7.7e-53 211.8 321 92.2
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 7.7e-53 211.8 321 92.2
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.3e-52 211.1 327 89.9
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.7e-52 210.7 327 89.6
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 2.2e-52 210.3 317 91.8
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 2.2e-52 210.3 320 91.6
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 2.9e-52 209.9 321 88.5
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.9e-52 209.9 323 89.2
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.8e-52 209.5 326 89.3
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 6.5e-52 208.8 321 91.3
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 6.5e-52 208.8 323 89.8
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 6.5e-52 208.8 321 88.8
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 6.5e-52 208.8 320 91.2
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 8.5e-52 208.4 323 90.4
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 8.5e-52 208.4 319 90.9
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.4e-51 207.6 325 89.8
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.4e-51 207.6 309 92.9
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 1.4e-51 207.6 323 90.1
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 2.5e-51 206.8 321 89.1
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 3.2e-51 206.5 322 91.6
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 3.2e-51 206.5 322 91.6
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 3.2e-51 206.5 324 89.2
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.2e-51 206.5 322 90.7
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.2e-51 206.5 322 90.7
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 3.2e-51 206.5 320 90.3
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 4.2e-51 206.1 323 89.8
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 5.5e-51 205.7 332 88.6
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 5.5e-51 205.7 321 90.7
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 5.5e-51 205.7 330 78.8
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 7.2e-51 205.3 317 90.5
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 9.4e-51 204.9 323 89.8
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.2e-50 204.5 330 88.8
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.1e-50 203.8 318 90.6
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.1e-50 203.8 317 90.2
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.7e-50 203.4 321 76.6
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 2.7e-50 203.4 328 88.7
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.7e-50 203.4 331 87.9
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 3.6e-50 203.0 325 88.3
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 4.6e-50 202.6 318 90.3
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 6.1e-50 202.2 323 88.9
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 7.9e-50 201.8 320 87.2
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 2.3e-49 200.3 309 91.6
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 2.3e-49 200.3 318 89.6
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 2.3e-49 200.3 323 89.5
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.0e-49 199.9 321 87.5
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.9e-49 199.5 325 87.4
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 3.9e-49 199.5 316 89.6
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 8.8e-49 198.4 317 82.0
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 8.8e-49 198.4 336 61.3
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 2.0e-48 197.2 322 89.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 3.3e-48 196.4 245 89.0
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 4.3e-48 196.1 242 89.3
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 5.7e-48 195.7 243 87.7
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 5.7e-48 195.7 319 89.0
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.3e-47 194.5 319 81.2
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 2.2e-47 193.7 370 65.7
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 2.2e-47 193.7 296 93.6
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.8e-47 193.4 324 88.0
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.4e-46 191.0 326 87.1
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 3.1e-46 189.9 296 91.2
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 3.1e-46 189.9 326 87.1
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.0e-45 187.2 321 80.4
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.0e-45 187.2 321 80.4
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.0e-45 187.2 344 64.0
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.9e-44 183.3 326 83.4
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 3.8e-44 183.0 315 87.6
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.1e-43 181.4 323 85.8
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.4e-43 181.0 101 85.1
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.5e-43 180.3 320 84.4
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 3.2e-43 179.9 243 69.5
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 9.4e-43 178.3 327 53.2
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 9.4e-43 178.3 315 87.3
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.7e-42 176.8 340 83.5
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.7e-42 176.0 243 85.2
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 4.7e-42 176.0 243 85.2
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.4e-41 174.5 316 85.4
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.8e-41 174.1 323 86.4
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 6.7e-41 172.2 340 75.6
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 8.8e-41 171.8 331 83.7
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 8.8e-41 171.8 331 84.0
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.5e-40 171.0 94 87.2
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 2.6e-40 170.2 100 85.0
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 3.3e-40 169.9 101 81.2
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 3.3e-40 169.9 101 81.2
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.3e-40 169.9 95 85.3
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.3e-40 169.9 95 85.3
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 5.7e-40 169.1 325 82.2
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 5.7e-40 169.1 101 81.2
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 5.7e-40 169.1 101 80.2
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 9.7e-40 168.3 319 84.3
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 9.7e-40 168.3 335 69.6
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.2e-39 167.2 104 79.8
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.3e-39 165.6 314 70.1
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 6.3e-39 165.6 93 83.9
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 8.2e-39 165.2 104 78.8
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 8.2e-39 165.2 222 91.9
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.1e-38 164.9 335 80.6
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.4e-38 164.5 318 82.4
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 1.5e-37 161.0 95 81.1
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.6e-37 160.2 323 83.3
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 5.9e-37 159.1 323 80.8
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 7.7e-37 158.7 102 78.4
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 9.4e-35 151.8 239 81.6
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 4.4e-32 142.9 245 78.4
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.8e-31 140.2 73 89.0
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.8e-28 129.8 86 66.3
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 8.5e-28 128.6 303 79.2
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 6.1e-26 122.5 325 74.8
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 2.0e-24 117.5 74 78.4
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.1e-22 111.7 275 79.6
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.5e-19 100.5 96 57.3
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.5e-19 99.4 65 73.8
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 1.6e-18 97.8 100 58.0
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.0e-17 95.1 50 82.0
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.4e-17 94.7 100 56.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.8e-17 94.4 64 64.1
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 3.4e-16 90.1 64 62.5
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.0e-14 82.4 117 86.3
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.7e-13 80.5 77 51.9
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.5e-13 79.7 179 88.8
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.3e-12 78.2 48 81.2
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.7e-12 77.8 67 62.7
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 2.3e-12 77.4 45 86.7
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.5e-11 74.7 241 68.9
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 4.2e-11 73.2 117 48.7
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 1.2e-10 71.6 42 78.6
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 8.0e-10 68.9 42 78.6
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 6.8e-09 65.9 42 76.2
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 2.2e-07 60.8 40 72.5


User provided reference genes

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