Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 4.5e-233 810.8 399 100.0
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.1e-215 753.1 399 91.7
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 9.5e-215 750.0 400 91.2
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 9.5e-215 750.0 400 91.2
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 7.5e-212 740.3 400 90.0
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.4e-210 736.1 399 89.2
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.4e-210 736.1 400 89.5
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 7.8e-209 730.3 400 88.5
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 3.0e-208 728.4 399 88.5
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.1e-206 722.2 404 88.1
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 2.4e-181 639.0 402 76.1
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 2.4e-173 612.5 406 74.9
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.1e-157 560.5 407 68.3
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.8e-157 559.7 407 69.0
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 2.4e-157 559.3 405 68.9
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.1e-157 558.9 406 68.7
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 5.3e-157 558.1 402 67.7
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 4.5e-156 555.1 408 67.6
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 7.7e-156 554.3 405 68.4
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 1.0e-155 553.9 402 67.2
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 6.5e-155 551.2 404 68.6
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 2.5e-154 549.3 403 67.5
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 4.2e-154 548.5 406 65.5
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 5.5e-154 548.1 403 66.7
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.2e-153 547.0 406 65.3
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 1.4e-152 543.5 406 67.0
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 5.1e-152 541.6 391 67.8
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.3e-150 537.0 379 69.9
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 2.2e-150 536.2 403 64.8
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 1.1e-149 533.9 407 65.4
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.4e-149 533.5 404 66.1
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 3.1e-149 532.3 406 63.1
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 5.3e-149 531.6 408 65.4
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 5.3e-149 531.6 407 64.4
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 5.3e-149 531.6 395 67.1
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.0e-148 529.6 401 66.1
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.0e-148 529.6 401 65.6
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 2.0e-148 529.6 408 64.7
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 3.5e-148 528.9 406 64.5
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 7.7e-148 527.7 403 66.5
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 1.0e-147 527.3 396 64.9
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.8e-147 525.4 410 66.1
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 3.8e-147 525.4 407 64.1
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.8e-147 525.4 401 65.3
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 5.0e-147 525.0 407 64.1
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 5.0e-147 525.0 407 64.9
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 5.0e-147 525.0 406 63.8
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.5e-146 523.5 404 64.1
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 7.2e-146 521.2 407 63.1
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 7.2e-146 521.2 404 62.9
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 9.4e-146 520.8 405 64.7
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 2.7e-145 519.2 406 65.0
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 2.7e-145 519.2 406 64.3
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 8.0e-145 517.7 399 65.7
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.0e-144 517.3 408 63.2
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 2.3e-144 516.2 408 63.5
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 8.8e-144 514.2 417 60.9
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 8.8e-144 514.2 407 63.1
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 2.6e-143 512.7 404 62.6
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 5.7e-143 511.5 408 63.2
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.2e-142 509.6 410 65.1
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 8.2e-142 507.7 405 62.5
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 2.4e-141 506.1 407 62.7
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.0e-140 503.1 396 62.9
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 4.5e-140 501.9 408 61.3
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 4.5e-140 501.9 406 62.3
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 4.5e-140 501.9 403 62.3
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 1.0e-139 500.7 405 61.5
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 5.0e-139 498.4 408 60.5
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 5.0e-139 498.4 409 62.6
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 1.1e-138 497.3 406 61.1
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 1.1e-138 497.3 411 62.3
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 1.5e-138 496.9 408 60.3
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 4.2e-138 495.4 413 62.5
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 1.6e-137 493.4 405 60.5
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 2.1e-137 493.0 404 62.1
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 2.7e-137 492.7 407 60.0
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 3.6e-137 492.3 411 60.3
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 6.1e-137 491.5 425 59.8
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 6.1e-137 491.5 365 66.8
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 1.4e-136 490.3 424 58.7
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 1.8e-136 490.0 416 61.3
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.8e-136 490.0 448 57.1
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 1.7e-134 483.4 412 60.7
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 6.3e-134 481.5 406 61.3
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.8e-133 479.9 422 59.7
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 3.5e-132 475.7 402 59.5
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 1.3e-131 473.8 400 60.5
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.3e-131 473.8 449 55.5
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 3.2e-130 469.2 356 65.2
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 7.2e-130 468.0 484 53.9
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.7e-129 466.1 399 60.4
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 4.7e-129 465.3 414 57.7
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.0e-128 464.2 407 59.2
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.8e-128 463.4 402 59.0
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 6.8e-128 461.5 397 61.2
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 5.7e-127 458.4 392 59.7
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 7.5e-127 458.0 436 55.3
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 7.5e-127 458.0 436 55.3
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.7e-126 456.8 397 60.2
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.2e-126 456.4 400 59.0
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 8.3e-126 454.5 364 61.5
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 5.4e-125 451.8 407 57.2
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 2.0e-124 449.9 351 65.8
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 2.9e-123 446.0 397 59.9
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 7.2e-122 441.4 384 57.6
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 9.5e-122 441.0 334 63.8
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 2.1e-121 439.9 392 59.7
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 1.2e-116 424.1 403 56.1
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 3.5e-116 422.5 400 54.8
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.3e-114 416.0 399 54.4
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 5.6e-114 415.2 400 54.5
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 7.3e-114 414.8 402 53.2
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 2.8e-113 412.9 398 53.5
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 3.6e-113 412.5 400 54.5
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 6.2e-113 411.8 400 53.0
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.0e-112 411.0 399 54.1
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 4.0e-112 409.1 367 57.8
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.2e-111 407.5 395 53.7
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 1.3e-110 404.1 390 54.9
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 1.4e-109 400.6 401 52.6
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 5.4e-109 398.7 320 61.9
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 6.0e-108 395.2 382 53.1
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 8.6e-107 391.3 327 57.2
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 2.8e-105 386.3 251 72.9
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 1.4e-104 384.0 403 51.1
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 6.4e-102 375.2 320 57.8
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 2.8e-97 359.8 388 50.8
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 2.8e-97 359.8 388 50.8
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 6.2e-97 358.6 388 50.5
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.2e-96 355.5 261 67.0
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 5.8e-95 352.1 408 50.5
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.2e-94 350.1 390 46.2
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 1.0e-91 341.3 358 50.6
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 3.6e-89 332.8 395 45.3
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 5.8e-87 325.5 272 58.5
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.7e-86 323.9 338 51.2
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 3.8e-86 322.8 335 50.7
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 8.4e-86 321.6 264 62.9
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 8.4e-86 321.6 264 62.9
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 8.7e-83 311.6 275 59.3
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 4.3e-82 309.3 396 43.4
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 4.3e-82 309.3 392 44.1
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 2.8e-81 306.6 399 42.9
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.4e-80 304.3 231 67.1
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 3.1e-80 303.1 251 58.6
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.0e-80 302.8 257 59.5
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 1.6e-65 254.2 297 47.8
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.2e-63 248.1 366 41.8
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.0e-62 245.0 193 60.6
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.1e-61 241.5 156 71.8
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 9.6e-58 228.4 446 34.8
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 6.1e-52 209.1 299 45.5
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 3.0e-51 206.8 370 38.9
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 5.7e-50 202.6 298 44.0
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 4.5e-47 193.0 358 36.6
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 4.8e-41 172.9 455 29.0
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 1.8e-32 144.4 142 58.5
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.8e-32 144.4 130 56.2
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.1e-32 143.7 98 65.3
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 3.1e-32 143.7 125 60.8
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 5.0e-30 136.3 125 56.8
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 6.5e-30 136.0 113 62.8
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.5e-29 134.8 315 30.5
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 9.4e-21 105.5 67 76.1
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.3e-19 100.9 67 73.1
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.4e-16 90.9 120 39.2
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.0e-14 85.5 115 43.5
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 3.8e-14 83.6 55 76.4
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 7.5e-10 69.3 58 53.4
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 2.8e-09 67.4 131 34.4
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.8e-09 67.4 65 56.9
C02p60980 Brassica napus HOM05D003933 ORTHO05D004746 1.2e-07 62.0 52 67.3
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 2.3e-06 57.8 44 65.9


User provided reference genes

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