Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 0.0e+00 1186.0 599 100.0
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1137.9 600 93.5
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 0.0e+00 1137.5 599 93.8
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1137.1 599 95.5
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1135.2 599 95.5
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1134.8 600 95.5
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1132.9 599 95.0
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1131.7 600 93.2
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1131.7 600 93.0
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1129.4 600 95.2
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1127.9 601 95.2
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1119.4 599 94.7
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 0.0e+00 1105.5 599 90.8
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 0.0e+00 1100.9 599 90.8
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 0.0e+00 1092.8 599 92.0
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 0.0e+00 1090.5 600 91.2
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.3e-303 1045.8 600 87.8
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.1e-296 1022.7 599 83.5
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.1e-296 1022.7 602 83.6
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 1.1e-294 1016.1 599 83.0
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 5.0e-292 1007.3 604 82.6
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 6.5e-292 1006.9 602 82.6
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 3.2e-291 1004.6 605 83.0
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 1.2e-290 1002.7 603 82.3
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 4.7e-290 1000.7 604 82.0
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.5e-288 995.7 599 83.3
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 5.7e-288 993.8 573 84.5
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.1e-278 963.0 600 81.8
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.2e-276 955.3 603 80.8
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 7.0e-270 933.7 519 87.9
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.2e-267 924.5 605 77.5
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 1.0e-265 919.8 570 77.4
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.4e-264 914.4 570 77.0
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 4.4e-264 914.4 570 77.0
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 7.5e-264 913.7 570 77.0
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 8.3e-263 910.2 570 77.2
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.1e-262 909.8 606 73.3
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 1.8e-262 909.1 570 76.3
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.4e-262 908.7 570 77.2
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 7.0e-262 907.1 570 77.0
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 9.1e-262 906.7 599 74.1
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 9.1e-262 906.7 572 75.9
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 4.5e-261 904.4 570 76.0
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 1.3e-260 902.9 570 76.0
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 1.7e-260 902.5 571 76.0
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.3e-260 902.1 569 75.9
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.0e-260 901.0 893 55.8
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.5e-259 899.4 554 78.2
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.9e-259 899.0 570 76.1
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 2.5e-259 898.7 569 76.4
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.3e-259 898.3 569 76.8
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 1.2e-258 896.3 567 76.5
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 1.6e-258 896.0 549 78.0
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.6e-258 896.0 576 75.0
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 3.6e-258 894.8 570 74.7
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 4.7e-258 894.4 570 75.4
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 6.1e-258 894.0 570 75.4
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 8.0e-258 893.6 571 76.4
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 8.0e-258 893.6 577 76.1
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 2.3e-257 892.1 569 74.9
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 2.3e-257 892.1 570 74.7
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 3.0e-257 891.7 576 74.5
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.0e-257 891.7 572 75.0
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 4.0e-257 891.3 577 75.7
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 5.2e-257 891.0 570 74.6
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 1.2e-256 889.8 573 74.9
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 1.5e-256 889.4 575 74.3
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 1.5e-256 889.4 557 75.9
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 3.4e-256 888.3 571 75.3
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 1.3e-255 886.3 577 74.7
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 1.7e-255 885.9 591 73.1
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 1.7e-255 885.9 590 73.6
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 6.3e-255 884.0 548 76.5
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 1.4e-254 882.9 579 72.5
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 4.1e-254 881.3 569 75.0
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 9.2e-254 880.2 552 76.3
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 9.2e-254 880.2 551 75.9
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.2e-253 879.8 556 76.8
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 1.2e-253 879.8 599 71.5
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.6e-253 879.4 571 75.5
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 5.9e-253 877.5 574 73.5
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 5.9e-253 877.5 570 74.4
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 5.9e-253 877.5 571 74.3
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 1.0e-252 876.7 561 75.4
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 1.0e-252 876.7 572 76.2
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.3e-252 876.3 603 71.6
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 1.3e-252 876.3 572 74.8
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 1.7e-252 875.9 572 75.3
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 2.3e-252 875.5 578 73.9
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 3.9e-252 874.8 569 72.4
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 3.3e-251 871.7 571 74.8
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 3.3e-251 871.7 553 75.8
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 7.3e-251 870.5 625 69.9
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 7.3e-251 870.5 549 75.4
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 1.6e-250 869.4 599 72.1
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.6e-250 868.2 625 69.8
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 6.1e-250 867.5 574 73.2
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 8.0e-250 867.1 578 73.4
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.0e-249 866.7 625 69.6
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.0e-249 866.7 573 72.6
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.8e-249 865.9 571 74.8
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 1.8e-249 865.9 569 73.6
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.1e-249 865.1 595 71.8
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 5.2e-249 864.4 558 74.7
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 5.2e-249 864.4 572 73.4
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 8.9e-249 863.6 578 72.5
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.2e-248 863.2 599 71.1
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 2.0e-248 862.4 575 72.7
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 4.4e-248 861.3 570 74.2
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 7.5e-248 860.5 593 71.3
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 3.7e-247 858.2 593 71.5
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 3.7e-247 858.2 572 72.4
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 1.6e-245 852.8 539 75.3
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 1.7e-244 849.4 552 75.0
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 3.0e-244 848.6 590 71.2
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 5.0e-244 847.8 677 64.3
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 5.6e-243 844.3 575 71.1
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 4.0e-241 838.2 520 77.3
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 4.6e-237 824.7 573 71.4
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 3.3e-235 818.5 603 68.7
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 9.2e-230 800.4 527 74.8
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 6.6e-228 794.3 542 70.1
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 7.3e-227 790.8 579 66.3
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 1.1e-219 766.9 495 75.2
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 2.0e-216 756.1 907 47.6
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.6e-205 719.9 576 60.9
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 6.7e-196 688.0 569 61.2
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 1.9e-195 686.4 570 61.4
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 2.9e-191 672.5 566 57.4
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 9.3e-190 667.5 517 65.8
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 1.8e-188 663.3 400 79.0
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.8e-186 655.2 433 78.8
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.4e-182 643.7 440 68.4
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 9.7e-163 577.8 340 83.2
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 2.0e-152 543.5 565 49.9
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.9e-152 542.0 443 68.8
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 1.9e-150 537.0 422 66.1
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 2.8e-133 479.9 307 76.5
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 2.8e-117 426.8 349 59.3
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 6.4e-106 389.0 446 44.8
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.3e-98 364.8 528 39.2
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.7e-96 357.1 466 41.8
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.2e-85 319.3 220 73.2
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 3.2e-81 307.0 248 66.1
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 6.7e-79 299.3 176 81.8
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 6.5e-74 282.7 421 39.0
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 2.3e-71 274.2 203 61.6
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.6e-69 268.1 218 59.6
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.6e-69 268.1 218 59.6
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 3.2e-65 253.8 170 68.8
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.5e-62 245.0 365 34.8
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 3.4e-59 233.8 165 65.5
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 2.2e-45 188.0 228 46.9
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 3.5e-43 180.6 109 82.6
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.4e-28 131.3 72 83.3
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 2.7e-27 127.9 170 45.9
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 4.5e-27 127.1 166 46.4
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 1.9e-25 121.7 112 54.5
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 5.6e-17 93.6 105 53.3
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 6.8e-15 86.7 43 86.0
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 2.9e-13 81.3 49 73.5
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 2.9e-13 81.3 49 73.5
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 2.7e-11 74.7 48 66.7
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 6.0e-11 73.6 79 46.8
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 3.0e-10 71.2 42 76.2
CARHR148430 Cardamine hirsuta HOM05D004337 ORTHO05D116339 6.2e-08 63.5 51 70.6


User provided reference genes

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