Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 9.3e-47 189.9 98 100.0
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 2.0e-25 119.0 100 74.0
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 2.2e-24 115.5 100 71.0
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 5.0e-24 114.4 83 75.9
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 6.5e-24 114.0 83 75.9
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 6.5e-24 114.0 83 75.9
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 8.5e-24 113.6 83 74.7
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 8.5e-24 113.6 103 68.9
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 1.5e-23 112.8 100 70.0
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.9e-23 112.5 83 73.5
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 2.5e-23 112.1 84 77.4
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 9.4e-23 110.2 100 70.0
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 3.6e-22 108.2 97 66.0
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 2.3e-21 105.5 95 66.3
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 1.5e-20 102.8 79 68.4
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 1.5e-20 102.8 92 62.0
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 3.3e-20 101.7 86 64.0
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 3.3e-20 101.7 90 61.1
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 3.3e-20 101.7 92 62.0
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 3.3e-20 101.7 79 67.1
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 3.3e-20 101.7 90 62.2
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 4.4e-20 101.3 82 65.9
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 4.4e-20 101.3 79 67.1
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 4.4e-20 101.3 88 62.5
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 4.4e-20 101.3 79 67.1
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 5.7e-20 100.9 92 62.0
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 5.7e-20 100.9 92 60.9
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 5.7e-20 100.9 79 67.1
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 5.7e-20 100.9 92 60.9
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 5.7e-20 100.9 92 60.9
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 5.7e-20 100.9 92 58.7
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 7.4e-20 100.5 88 62.5
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 7.4e-20 100.5 88 62.5
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 7.4e-20 100.5 88 62.5
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 7.4e-20 100.5 92 57.6
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 7.4e-20 100.5 88 62.5
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 7.4e-20 100.5 92 59.8
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 9.7e-20 100.1 92 58.7
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 9.7e-20 100.1 79 67.1
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 9.7e-20 100.1 79 65.8
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 9.7e-20 100.1 88 62.5
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 1.3e-19 99.8 88 62.5
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.7e-19 99.4 88 61.4
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.7e-19 99.4 88 59.1
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 1.7e-19 99.4 79 65.8
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.7e-19 99.4 79 65.8
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 2.2e-19 99.0 88 62.5
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 2.2e-19 99.0 79 65.8
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 2.8e-19 98.6 92 57.6
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 2.8e-19 98.6 92 59.8
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 3.7e-19 98.2 93 68.8
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.7e-19 98.2 91 60.4
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 3.7e-19 98.2 92 58.7
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 4.8e-19 97.8 79 64.6
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 4.8e-19 97.8 79 64.6
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 4.8e-19 97.8 92 57.6
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.8e-19 97.8 79 64.6
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.8e-19 97.8 79 64.6
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 4.8e-19 97.8 88 62.5
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 6.3e-19 97.4 88 60.2
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 6.3e-19 97.4 88 60.2
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 6.3e-19 97.4 92 57.6
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 6.3e-19 97.4 88 61.4
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 8.2e-19 97.1 83 65.1
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 8.2e-19 97.1 83 65.1
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 8.2e-19 97.1 83 65.1
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.2e-19 97.1 90 60.0
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 8.2e-19 97.1 90 60.0
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 8.2e-19 97.1 79 65.8
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 8.2e-19 97.1 79 62.0
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 8.2e-19 97.1 92 59.8
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 1.1e-18 96.7 79 64.6
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.1e-18 96.7 92 57.6
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.4e-18 96.3 92 54.3
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 1.4e-18 96.3 86 61.6
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 1.4e-18 96.3 88 59.1
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 1.4e-18 96.3 92 56.5
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.4e-18 96.3 95 56.8
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.4e-18 96.3 92 58.7
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.4e-18 96.3 92 58.7
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 1.8e-18 95.9 92 57.6
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.4e-18 95.5 92 56.5
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.4e-18 95.5 92 56.5
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.1e-18 95.1 83 63.9
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 3.1e-18 95.1 79 63.3
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 3.1e-18 95.1 88 60.2
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 4.1e-18 94.7 82 63.4
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 7.0e-18 94.0 91 56.0
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 7.0e-18 94.0 86 59.3
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.6e-17 92.8 84 59.5
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.6e-17 92.8 95 54.7
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 2.0e-17 92.4 90 56.7
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 2.6e-17 92.0 92 56.5
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 3.5e-17 91.7 79 60.8
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.5e-17 91.7 86 58.1
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.5e-17 91.3 79 60.8
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.5e-17 91.3 79 60.8
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 5.9e-17 90.9 95 55.8
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 7.7e-17 90.5 79 58.2
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 1.0e-16 90.1 79 59.5
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 1.3e-16 89.7 92 54.3
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.7e-16 89.4 79 60.8
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 2.2e-16 89.0 88 55.7
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 2.2e-16 89.0 88 55.7
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 3.8e-16 88.2 79 60.8
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 8.5e-16 87.0 85 55.3
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 8.5e-16 87.0 81 55.6
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.1e-15 86.7 81 60.5
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 1.5e-15 86.3 79 59.5
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.5e-15 85.5 91 56.0
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 3.2e-15 85.1 91 52.7
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 9.4e-15 83.6 79 51.9
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.6e-14 82.8 88 53.4
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 8.0e-14 80.5 68 64.7
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 1.0e-13 80.1 78 55.1
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 1.0e-13 80.1 91 48.4
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.8e-13 79.3 79 50.6
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 4.0e-13 78.2 84 47.6
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 1.5e-12 76.3 87 47.1
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 2.6e-12 75.5 80 53.8
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 2.8e-11 72.0 71 54.9
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.8e-11 71.2 67 53.7
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.8e-11 71.2 67 53.7
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.4e-10 69.7 67 50.7
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.1e-10 68.6 68 52.9
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.2e-09 66.6 68 51.5
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.6e-09 66.2 68 50.0
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 1.6e-09 66.2 62 58.1
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 2.7e-09 65.5 43 72.1
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 5.9e-09 64.3 79 45.6
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 3.8e-08 61.6 89 47.2
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 6.5e-08 60.8 45 64.4
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.9e-07 59.3 66 47.0
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 2.5e-07 58.9 66 48.5
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 3.2e-07 58.5 79 44.3
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 9.4e-07 57.0 49 59.2
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 9.4e-07 57.0 49 59.2
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 9.4e-07 57.0 83 39.8
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 2.7e-06 55.5 66 45.5
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 3.6e-06 55.1 67 44.8


User provided reference genes

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