Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 7.4e-44 180.3 98 100.0
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.5e-31 138.7 82 92.7
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 3.6e-30 134.8 79 92.4
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 4.7e-30 134.4 82 89.0
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 6.1e-30 134.0 79 92.4
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.8e-29 132.5 82 90.2
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 5.1e-29 131.0 82 87.8
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 8.8e-29 130.2 79 89.9
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.1e-28 129.8 79 89.9
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.5e-28 129.4 79 89.9
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.7e-27 125.9 100 77.0
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 9.1e-26 120.2 77 85.7
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 4.2e-23 111.3 78 82.1
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-21 106.7 82 75.6
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 5.7e-20 100.9 77 75.3
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 2.2e-19 99.0 96 64.6
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 7.0e-18 94.0 79 67.1
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.2e-17 93.2 81 64.2
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.6e-17 92.8 77 67.5
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.7e-16 89.4 81 63.0
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.2e-16 89.0 80 65.0
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.2e-16 89.0 82 61.0
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.8e-16 88.2 81 59.3
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 6.5e-16 87.4 80 65.0
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 8.5e-16 87.0 84 61.9
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.5e-15 86.3 84 60.7
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.2e-15 85.1 80 63.8
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 3.2e-15 85.1 75 65.3
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.2e-15 85.1 78 62.8
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 4.2e-15 84.7 82 59.8
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 2.7e-14 82.0 86 59.3
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 6.1e-14 80.9 81 60.5
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 6.1e-14 80.9 79 59.5
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.0e-13 80.1 83 59.0
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.0e-13 80.1 78 59.0
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.0e-13 80.1 81 55.6
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.8e-13 79.3 75 62.7
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 2.3e-13 79.0 88 58.0
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.0e-13 78.6 88 58.0
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 4.0e-13 78.2 79 58.2
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.0e-13 78.2 79 55.7
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.0e-13 78.2 88 56.8
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 6.8e-13 77.4 79 55.7
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 8.8e-13 77.0 82 56.1
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.0e-12 75.9 88 56.8
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.6e-12 75.5 81 59.3
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 2.6e-12 75.5 79 57.0
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.4e-12 75.1 80 55.0
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.4e-12 75.1 79 54.4
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 4.4e-12 74.7 77 54.5
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 5.7e-12 74.3 79 58.2
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.5e-12 73.9 86 50.0
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 9.8e-12 73.6 79 54.4
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 9.8e-12 73.6 82 59.8
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 9.8e-12 73.6 79 54.4
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 9.8e-12 73.6 82 54.9
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.3e-11 73.2 87 54.0
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.7e-11 72.8 76 59.2
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.7e-11 72.8 81 54.3
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 1.7e-11 72.8 93 51.6
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 2.2e-11 72.4 87 54.0
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 2.8e-11 72.0 79 59.5
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 3.7e-11 71.6 78 56.4
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 3.7e-11 71.6 81 53.1
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 3.7e-11 71.6 81 54.3
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.8e-11 71.2 81 54.3
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.8e-11 71.2 81 54.3
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 4.8e-11 71.2 81 54.3
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 4.8e-11 71.2 81 56.8
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.3e-11 70.9 81 55.6
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 6.3e-11 70.9 82 57.3
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 8.3e-11 70.5 81 54.3
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 8.3e-11 70.5 81 53.1
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.1e-10 70.1 56 66.1
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.1e-10 70.1 79 54.4
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.4e-10 69.7 78 56.4
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.8e-10 69.3 83 53.0
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.8e-10 69.3 81 54.3
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 2.4e-10 68.9 79 58.2
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 2.4e-10 68.9 82 52.4
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.1e-10 68.2 81 53.1
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 4.1e-10 68.2 78 53.8
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 4.1e-10 68.2 84 51.2
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 5.4e-10 67.8 81 51.9
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 7.0e-10 67.4 78 55.1
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 7.0e-10 67.4 88 52.3
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 7.0e-10 67.4 92 48.9
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 9.1e-10 67.0 74 52.7
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 9.1e-10 67.0 79 51.9
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 9.1e-10 67.0 81 53.1
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.7e-09 65.5 74 50.0
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.5e-09 65.1 79 51.9
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 3.5e-09 65.1 78 50.0
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 4.5e-09 64.7 83 54.2
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 5.9e-09 64.3 77 57.1
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 5.9e-09 64.3 82 53.7
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 5.9e-09 64.3 76 52.6
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 5.9e-09 64.3 81 49.4
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 5.9e-09 64.3 79 50.6
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.7e-09 63.9 81 51.9
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 7.7e-09 63.9 81 48.1
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 7.7e-09 63.9 81 49.4
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 7.7e-09 63.9 81 49.4
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-08 63.2 84 50.0
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 1.7e-08 62.8 84 51.2
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.7e-08 62.8 80 50.0
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.7e-08 62.8 86 51.2
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 2.2e-08 62.4 84 50.0
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.2e-08 62.4 86 50.0
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 2.9e-08 62.0 76 53.9
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 2.9e-08 62.0 76 53.9
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 2.9e-08 62.0 78 51.3
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.9e-08 62.0 81 50.6
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 3.8e-08 61.6 83 49.4
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 5.0e-08 61.2 84 48.8
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 5.0e-08 61.2 84 53.6
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.0e-08 61.2 83 49.4
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.0e-08 61.2 84 53.6
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.0e-08 61.2 76 51.3
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 5.0e-08 61.2 76 48.7
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 6.5e-08 60.8 81 49.4
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 6.5e-08 60.8 81 50.6
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 6.5e-08 60.8 89 47.2
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 8.5e-08 60.5 82 47.6
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 8.5e-08 60.5 79 51.9
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 1.5e-07 59.7 79 48.1
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.9e-07 59.3 85 47.1
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 2.5e-07 58.9 36 77.8
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 2.5e-07 58.9 96 44.8
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 3.2e-07 58.5 35 77.1
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 3.2e-07 58.5 35 77.1
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 3.2e-07 58.5 78 47.4
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 4.2e-07 58.2 94 48.9
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 4.2e-07 58.2 81 49.4
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.5e-07 57.8 85 47.1
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 5.5e-07 57.8 78 47.4
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 5.5e-07 57.8 82 46.3
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 5.5e-07 57.8 64 53.1
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 5.5e-07 57.8 79 49.4
Zm00001eb383200 Zea mays HOM05D004051 ORTHO05D004480 5.5e-07 57.8 90 44.4
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 7.2e-07 57.4 75 53.3
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 7.2e-07 57.4 78 44.9
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 9.4e-07 57.0 77 51.9
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 9.4e-07 57.0 83 47.0
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 2.1e-06 55.8 76 47.4
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.1e-06 55.8 74 51.4
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.1e-06 55.8 74 51.4
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 2.7e-06 55.5 76 47.4
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 2.7e-06 55.5 71 50.7
Os06g0530200 Oryza sativa ssp. japonica HOM05D004051 ORTHO05D004480 2.7e-06 55.5 93 43.0
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.7e-06 55.5 93 43.0
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 3.6e-06 55.1 73 49.3
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 6.1e-06 54.3 77 48.1
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 8.0e-06 53.9 73 49.3
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 8.0e-06 53.9 81 46.9


User provided reference genes

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