Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 0.0e+00 1254.6 635 100.0
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 8.4e-282 973.4 552 89.7
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.5e-270 935.3 552 85.1
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 7.7e-267 923.7 557 82.8
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.1e-265 919.8 552 83.5
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 3.0e-263 911.8 545 84.4
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 4.4e-262 907.9 548 86.5
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 8.2e-261 903.7 553 84.8
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 8.5e-258 893.6 552 84.1
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 1.1e-254 883.2 552 83.3
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 9.7e-254 880.2 548 83.6
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 1.2e-251 873.2 557 81.9
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 3.0e-239 832.0 553 77.9
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.6e-235 819.7 559 75.8
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 4.5e-235 818.1 561 76.3
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 6.1e-232 807.7 558 73.5
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 2.3e-231 805.8 562 71.9
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 3.0e-231 805.4 553 75.4
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.8e-229 798.9 548 76.5
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 9.2e-228 793.9 557 75.4
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 5.0e-226 788.1 560 70.5
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 6.6e-226 787.7 560 70.4
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 6.6e-226 787.7 562 71.7
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 9.8e-222 773.9 551 71.5
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 3.7e-205 718.8 549 67.4
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 3.7e-205 718.8 551 68.2
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.0e-182 643.3 573 62.0
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 1.3e-176 624.0 576 55.9
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 4.5e-166 589.0 576 53.3
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 1.0e-162 577.8 569 52.9
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 3.9e-162 575.9 571 53.1
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 4.8e-160 568.9 404 72.5
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 8.2e-160 568.2 567 51.1
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.1e-159 567.8 551 53.2
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.7e-157 560.5 565 53.8
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 2.2e-157 560.1 581 50.4
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 8.5e-157 558.1 580 51.2
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.9e-156 557.0 648 48.6
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 1.8e-154 550.4 564 51.6
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 3.0e-154 549.7 579 49.4
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 1.9e-153 547.0 592 49.8
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 5.7e-153 545.4 584 52.1
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.3e-152 544.3 590 49.8
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 1.8e-151 540.4 551 50.8
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 3.1e-151 539.7 563 49.7
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 2.6e-150 536.6 553 50.8
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.7e-149 533.9 560 49.1
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 2.5e-148 530.0 593 51.6
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 2.1e-147 526.9 577 48.2
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.7e-147 526.6 591 50.1
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 3.6e-147 526.2 545 52.5
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 4.7e-147 525.8 572 48.8
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.5e-145 520.8 571 48.3
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 7.4e-145 518.5 550 50.4
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 6.3e-144 515.4 577 47.8
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 8.2e-144 515.0 614 49.7
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 3.1e-143 513.1 562 49.3
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 7.7e-142 508.4 557 49.2
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.3e-141 507.7 596 48.8
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.1e-140 504.6 616 45.8
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 5.2e-138 495.7 547 48.1
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 2.0e-137 493.8 560 47.7
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 5.7e-137 492.3 554 47.5
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 9.7e-137 491.5 553 47.7
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 1.7e-136 490.7 549 47.9
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 4.8e-136 489.2 567 48.7
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.1e-135 486.1 468 53.2
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 2.2e-133 480.3 570 46.0
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 4.2e-132 476.1 618 46.8
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.6e-131 474.2 581 46.1
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 2.7e-131 473.4 586 45.2
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 6.1e-131 472.2 574 47.6
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 2.3e-130 470.3 295 80.0
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 3.0e-130 469.9 615 45.7
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 3.0e-130 469.9 588 47.8
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 2.6e-129 466.8 600 44.2
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 3.3e-129 466.5 611 47.0
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 5.7e-129 465.7 580 46.0
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 1.4e-127 461.1 571 44.3
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.8e-127 460.7 525 47.4
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 4.1e-127 459.5 463 49.2
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 7.7e-126 455.3 648 42.9
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.3e-125 454.5 289 80.3
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.3e-125 454.5 534 46.4
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 1.7e-125 454.1 542 47.8
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.7e-125 454.1 480 48.8
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.5e-124 451.1 604 45.2
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.5e-124 451.1 604 45.2
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 6.8e-122 442.2 566 44.7
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 9.8e-121 438.3 467 49.9
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 6.3e-120 435.6 654 42.2
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 1.8e-119 434.1 495 48.5
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 4.1e-119 433.0 606 43.4
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 7.0e-119 432.2 608 43.3
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 2.3e-117 427.2 651 39.3
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 5.4e-111 406.0 426 47.7
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 3.3e-108 396.7 421 49.9
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.6e-107 394.4 548 43.2
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 8.0e-107 392.1 557 41.3
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 5.2e-106 389.4 603 39.0
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 4.9e-104 382.9 490 44.3
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 4.1e-103 379.8 493 44.4
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 2.0e-102 377.5 277 69.3
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.5e-100 371.3 557 39.5
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 1.2e-99 368.2 582 42.6
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 4.9e-96 356.3 469 44.1
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 1.7e-93 347.8 227 76.7
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 3.4e-89 333.6 438 39.7
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 7.5e-89 332.4 463 39.3
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 3.7e-88 330.1 326 51.5
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 1.4e-87 328.2 462 43.5
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 6.0e-86 322.8 655 36.0
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.0e-85 322.0 431 40.4
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.5e-84 318.2 349 49.6
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.9e-84 317.8 501 37.3
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.6e-83 314.7 340 48.8
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 2.4e-79 300.8 485 35.7
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 2.3e-77 294.3 339 45.7
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.5e-76 291.6 354 46.0
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 4.2e-71 273.5 299 46.5
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.7e-69 268.1 250 50.4
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 1.5e-60 238.4 240 51.7
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 3.3e-60 237.3 237 51.9
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 4.2e-55 220.3 329 39.8
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.1e-54 218.0 242 48.8
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 9.6e-52 209.1 267 44.9
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 1.4e-50 205.3 273 45.4
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 5.3e-50 203.4 158 58.9
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 1.0e-48 199.1 132 65.2
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.2e-47 194.1 234 44.4
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 7.9e-46 189.5 254 49.6
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 3.9e-45 187.2 223 47.5
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.2e-41 175.6 238 42.4
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.2e-41 175.6 308 35.4
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 2.9e-40 171.0 147 55.8
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 1.0e-37 162.5 379 35.1
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 8.5e-32 142.9 222 44.6
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 1.6e-30 138.7 182 45.1
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.1e-29 133.7 164 42.7
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 6.7e-29 133.3 180 41.1
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.1e-28 132.5 182 41.2
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.3e-27 129.0 182 40.7
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.7e-27 127.5 113 54.9
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.8e-27 127.1 182 40.1
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 6.3e-27 126.7 418 25.1
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.1e-26 125.9 182 41.2
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.1e-26 125.9 182 41.2
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.1e-26 125.9 182 41.2
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 1.2e-25 122.5 129 48.1
BcaB07g31053 Brassica carinata HOM05D003812 ORTHO05D004393 1.5e-25 122.1 65 89.2
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 5.9e-25 120.2 177 40.1
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.3e-24 119.0 221 40.3
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 7.2e-23 113.2 239 34.3
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.6e-22 112.1 103 51.5
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 8.0e-22 109.8 96 53.1
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-21 109.0 102 51.0
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 2.3e-21 108.2 110 53.6
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 4.4e-20 104.0 132 41.7
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.4e-18 98.2 185 36.8
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 5.3e-18 97.1 132 40.9
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.9e-16 91.3 169 36.1
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.0e-13 82.8 69 50.7
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 4.0e-13 80.9 184 43.5
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-12 79.3 82 46.3
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.4e-12 77.8 56 67.9
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 1.3e-11 75.9 78 47.4
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.4e-10 72.4 192 37.5
BolC8t48198H Brassica oleracea HOM05D003812 ORTHO05D004393 5.3e-10 70.5 35 88.6
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 5.9e-09 67.0 261 31.0
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.8e-08 64.3 94 45.7
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 5.0e-08 63.9 46 63.0
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 8.0e-06 56.6 47 57.4


User provided reference genes

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