Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 3.1e-248 861.3 420 100.0
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 2.6e-218 761.9 420 87.9
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 3.0e-211 738.4 416 86.5
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 6.3e-209 730.7 415 84.6
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 1.8e-208 729.2 415 84.3
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 9.7e-202 706.8 424 82.5
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 4.8e-201 704.5 424 82.3
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 2.7e-199 698.7 416 83.4
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 1.2e-183 646.7 404 81.2
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 1.0e-182 643.7 404 81.7
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 9.5e-181 637.1 404 80.4
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 1.4e-179 633.3 404 80.0
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 3.5e-175 618.6 428 74.1
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 1.1e-155 553.9 423 64.8
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 1.3e-150 537.0 317 84.2
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 4.2e-120 435.6 400 56.0
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 4.6e-119 432.2 391 57.0
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 3.0e-118 429.5 404 53.5
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 3.0e-118 429.5 400 54.8
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 7.4e-117 424.9 401 53.4
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.2e-116 423.3 391 56.8
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.7e-116 422.5 391 56.8
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 4.8e-116 422.2 391 55.0
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.1e-115 421.0 391 56.5
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 1.8e-115 420.2 400 54.2
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 9.0e-115 417.9 397 55.4
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 3.4e-114 416.0 399 53.4
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 7.6e-114 414.8 399 52.6
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 1.3e-113 414.1 426 51.4
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 2.9e-113 412.9 399 52.4
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 3.8e-113 412.5 400 53.5
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.1e-112 411.0 391 56.0
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.4e-112 410.6 389 53.7
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 5.5e-112 408.7 401 52.1
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 1.2e-111 407.5 394 55.1
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.2e-111 407.5 399 52.1
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 1.6e-111 407.1 406 51.7
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 3.6e-111 406.0 401 50.4
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 7.9e-111 404.8 400 52.0
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 1.8e-110 403.7 394 52.3
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 1.8e-110 403.7 375 57.6
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 3.9e-110 402.5 399 51.6
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 3.9e-110 402.5 401 50.4
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 6.7e-110 401.7 420 50.7
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 2.5e-109 399.8 418 48.8
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 3.3e-109 399.4 391 52.4
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 3.3e-109 399.4 398 51.3
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 4.3e-109 399.1 421 48.0
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 1.4e-107 394.0 424 48.6
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 1.8e-107 393.7 394 50.5
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.4e-107 393.3 391 51.9
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 3.1e-107 392.9 402 49.5
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 3.1e-107 392.9 402 50.0
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 4.5e-106 389.0 399 50.9
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 1.7e-105 387.1 397 50.6
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 8.5e-105 384.8 399 50.1
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 2.5e-104 383.3 392 49.7
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.2e-104 382.9 396 50.0
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 1.6e-103 380.6 401 49.6
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 2.7e-103 379.8 390 49.2
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 3.6e-103 379.4 411 46.7
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 1.0e-102 377.9 396 49.0
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.8e-102 377.1 365 53.7
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 5.1e-102 375.6 419 46.8
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 5.1e-102 375.6 424 47.4
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 5.7e-101 372.1 374 51.1
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 5.7e-101 372.1 405 47.4
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.4e-101 371.7 379 50.9
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 9.7e-101 371.3 415 50.1
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 9.7e-101 371.3 397 50.1
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 4.8e-100 369.0 377 50.7
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 1.1e-99 367.9 391 47.8
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 2.4e-99 366.7 412 47.1
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 5.3e-99 365.5 396 48.2
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 2.0e-98 363.6 396 48.2
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 2.6e-98 363.2 397 48.6
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 2.6e-98 363.2 392 48.0
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 6.5e-97 358.6 393 47.6
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 8.5e-97 358.2 401 47.9
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 4.2e-96 355.9 395 45.8
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 2.3e-94 350.1 400 47.0
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 2.6e-93 346.7 401 45.9
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 3.3e-93 346.3 379 48.3
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 2.8e-92 343.2 386 46.1
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 3.7e-92 342.8 403 45.9
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 1.1e-91 341.3 369 48.5
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 4.5e-90 335.9 366 48.6
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 4.5e-90 335.9 369 48.8
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 1.7e-89 334.0 365 48.8
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 2.9e-89 333.2 357 50.1
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 8.5e-89 331.6 392 46.2
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 3.2e-88 329.7 438 42.7
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.7e-87 326.6 361 48.2
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 4.0e-86 322.8 180 88.3
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 8.8e-86 321.6 383 44.6
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 3.3e-85 319.7 365 48.5
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 3.3e-85 319.7 385 43.6
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 3.2e-80 303.1 400 42.5
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 7.2e-80 302.0 390 43.8
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.2e-77 294.7 382 43.2
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.6e-77 293.5 320 48.1
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 1.7e-76 290.8 389 42.9
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 2.8e-76 290.0 291 51.9
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 1.1e-75 288.1 319 53.6
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 3.5e-66 256.5 297 45.1
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 2.0e-61 240.7 180 71.1
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.6e-61 240.4 275 46.9
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 8.3e-60 235.3 244 50.4
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 9.2e-59 231.9 311 41.5
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 3.5e-58 229.9 287 43.9
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 6.0e-58 229.2 407 33.7
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 3.3e-56 223.4 198 52.5
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 1.2e-55 221.5 236 45.8
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 8.0e-55 218.8 296 43.9
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 2.3e-54 217.2 234 48.3
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 9.8e-53 211.8 257 46.3
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 1.4e-51 208.0 365 35.3
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 3.2e-51 206.8 176 58.0
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 1.6e-50 204.5 211 51.2
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-43 181.0 162 53.1
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 4.3e-40 169.9 189 47.1
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-37 161.4 318 33.6
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.9e-33 146.7 275 34.5
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 1.1e-32 145.2 198 44.9
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 9.6e-32 142.1 177 39.5
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-31 141.4 140 50.7
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 1.8e-30 137.9 244 36.1
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 4.0e-30 136.7 180 38.9
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 1.4e-27 128.3 196 41.3
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 1.5e-24 118.2 102 52.9
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.0e-21 107.8 114 50.0
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-19 101.7 106 50.9
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.4e-19 100.9 114 48.2
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.4e-19 99.8 106 49.1
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.6e-16 89.0 103 47.6
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 3.4e-13 80.5 82 45.1
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.8e-13 79.7 84 45.2
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 6.7e-09 66.2 83 41.0
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.4e-08 62.8 48 58.3


User provided reference genes

Program Settings