Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 5.9e-50 200.7 110 100.0
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 1.5e-40 169.5 99 92.9
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 3.1e-38 161.8 96 90.6
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 8.9e-38 160.2 96 89.6
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 1.3e-36 156.4 96 87.5
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 4.9e-36 154.5 96 87.5
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 7.0e-35 150.6 99 86.9
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 7.0e-35 150.6 99 86.9
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 4.6e-34 147.9 99 83.8
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 7.8e-34 147.1 97 85.6
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 2.0e-29 132.5 97 74.2
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 1.3e-28 129.8 128 64.1
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 1.3e-28 129.8 128 65.6
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 1.2e-23 113.2 97 63.9
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 1.6e-23 112.8 95 64.2
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 2.1e-23 112.5 97 66.0
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 1.1e-22 110.2 97 62.9
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 4.0e-22 108.2 96 63.5
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 6.8e-22 107.5 101 58.4
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 2.0e-21 105.9 96 63.5
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 2.6e-21 105.5 99 58.6
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 4.4e-21 104.8 100 61.0
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 4.4e-21 104.8 100 61.0
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 1.7e-20 102.8 96 61.5
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 4.9e-20 101.3 97 60.8
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 4.9e-20 101.3 95 55.8
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 6.4e-20 100.9 99 56.6
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 1.1e-19 100.1 103 56.3
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 1.4e-19 99.8 99 59.6
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 5.4e-19 97.8 99 59.6
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 7.1e-19 97.4 97 55.7
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 1.2e-18 96.7 100 54.0
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 2.1e-18 95.9 97 53.6
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 3.5e-18 95.1 102 52.0
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 6.0e-18 94.4 97 56.7
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 1.0e-17 93.6 100 53.0
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 1.0e-17 93.6 83 56.6
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 6.6e-17 90.9 77 55.8
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 6.6e-17 90.9 100 48.0
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 8.7e-17 90.5 77 55.8
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 8.7e-17 90.5 98 53.1
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 1.1e-16 90.1 100 51.0
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 1.1e-16 90.1 98 57.1
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 1.1e-16 90.1 93 58.1
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 1.1e-16 90.1 101 53.5
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 1.9e-16 89.4 77 54.5
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 1.9e-16 89.4 78 53.8
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 7.3e-16 87.4 79 58.2
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 1.2e-15 86.7 75 61.3
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 1.2e-15 86.7 75 61.3
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 2.1e-15 85.9 97 53.6
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 2.1e-15 85.9 97 48.5
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 2.1e-15 85.9 101 52.5
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 2.8e-15 85.5 78 56.4
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 4.7e-15 84.7 64 64.1
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 8.1e-15 84.0 75 57.3
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 8.1e-15 84.0 93 45.2
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 8.1e-15 84.0 94 53.2
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 8.1e-15 84.0 98 49.0
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 1.1e-14 83.6 94 53.2
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 1.8e-14 82.8 97 50.5
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 1.8e-14 82.8 64 65.6
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 1.8e-14 82.8 64 65.6
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 1.8e-14 82.8 101 47.5
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 2.4e-14 82.4 63 65.1
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 2.4e-14 82.4 78 56.4
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 2.4e-14 82.4 90 53.3
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 1.2e-13 80.1 73 57.5
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 1.2e-13 80.1 100 45.0
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 2.0e-13 79.3 78 52.6
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 3.4e-13 78.6 71 54.9
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 7.6e-13 77.4 125 44.0
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 9.9e-13 77.0 99 46.5
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 2.2e-12 75.9 62 58.1
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 2.9e-12 75.5 105 41.0
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 6.4e-12 74.3 95 41.1
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 8.4e-12 73.9 57 59.6
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 1.1e-11 73.6 93 43.0
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 1.4e-11 73.2 83 42.2
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.9e-11 72.8 88 51.1
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 2.4e-11 72.4 65 58.5
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 4.2e-11 71.6 55 65.5
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 5.4e-11 71.2 75 48.0
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 1.0e-09 67.0 92 43.5
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 2.3e-09 65.9 51 62.7
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 8.7e-09 63.9 104 39.4
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.9e-08 62.8 56 58.9
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 7.3e-08 60.8 104 39.4
Actinidia14648 Actinidia chinensis HOM05D007649 ORTHO05D009668 1.4e-06 56.6 64 53.1
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.4e-06 56.6 111 41.4
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 5.3e-06 54.7 52 57.7


User provided reference genes

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