Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 7.4e-211 736.9 356 100.0
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 5.9e-184 647.5 356 87.4
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.3e-183 646.4 355 86.8
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.6e-181 639.4 355 85.9
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 5.2e-180 634.4 355 84.8
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.3e-178 629.8 351 84.3
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 3.7e-178 628.2 356 84.6
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.4e-177 626.3 351 83.8
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.4e-177 626.3 350 85.1
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 3.5e-176 621.7 353 82.7
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.3e-175 619.8 355 82.0
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 4.0e-172 608.2 348 83.3
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.9e-166 589.3 363 79.1
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 2.9e-162 575.5 399 71.4
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.1e-156 557.0 366 75.7
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.1e-156 555.4 351 74.4
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 5.1e-151 538.1 353 73.9
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 7.3e-150 534.3 351 76.9
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 3.4e-147 525.4 349 69.9
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 1.6e-144 516.5 546 52.4
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 4.3e-142 508.4 357 67.5
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.6e-142 508.1 353 68.3
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 2.8e-141 505.8 350 67.1
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 6.2e-141 504.6 356 66.6
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 8.1e-141 504.2 350 67.1
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.4e-140 503.4 352 67.9
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.8e-140 503.1 353 67.7
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.8e-140 503.1 359 66.9
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 4.0e-140 501.9 350 67.7
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.3e-140 501.5 351 67.2
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 5.3e-140 501.5 351 67.2
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 5.3e-140 501.5 352 69.3
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 6.9e-140 501.1 350 67.1
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 1.5e-139 500.0 349 68.8
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 2.0e-139 499.6 351 68.1
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 7.6e-139 497.7 351 67.2
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 7.6e-139 497.7 351 68.4
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.3e-138 496.9 355 66.2
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 1.7e-138 496.5 349 66.5
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 3.8e-138 495.4 350 66.6
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 6.4e-138 494.6 356 66.6
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 1.4e-137 493.4 353 66.0
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.4e-137 493.4 353 66.0
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 2.4e-137 492.7 350 65.7
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 3.2e-137 492.3 351 67.0
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 5.4e-137 491.5 355 65.6
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 5.4e-137 491.5 348 68.1
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 7.1e-137 491.1 346 67.9
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 9.3e-137 490.7 352 66.8
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 1.2e-136 490.3 347 68.3
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.6e-136 490.0 359 67.4
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 2.7e-136 489.2 359 65.5
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 4.6e-136 488.4 349 67.6
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 4.6e-136 488.4 350 68.0
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.0e-135 487.3 355 64.5
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.3e-135 486.9 353 65.4
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.8e-135 486.5 353 65.4
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 6.7e-135 484.6 349 65.6
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 9.6e-134 480.7 347 66.9
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.3e-133 480.3 358 65.1
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.6e-133 479.9 359 65.2
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 1.6e-133 479.9 363 65.3
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.6e-133 479.9 350 63.7
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.1e-133 479.6 356 63.8
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 3.7e-133 478.8 251 88.0
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 4.8e-133 478.4 382 60.7
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 8.1e-133 477.6 352 62.5
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.1e-132 477.2 350 64.0
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.4e-132 476.1 349 63.6
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 1.2e-131 473.8 350 63.4
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 2.0e-131 473.0 348 62.9
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 5.8e-131 471.5 358 63.4
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 5.8e-131 471.5 346 65.9
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.8e-131 471.5 346 64.7
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 7.6e-131 471.1 350 63.4
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.0e-130 470.7 352 61.4
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 1.0e-130 470.7 347 64.8
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 1.3e-130 470.3 348 62.9
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.7e-130 469.9 353 62.6
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.2e-130 469.5 351 64.4
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 2.9e-130 469.2 351 61.0
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.9e-130 469.2 353 62.6
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 4.9e-130 468.4 351 61.5
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 1.4e-129 466.8 352 61.4
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 9.3e-129 464.2 368 61.1
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 6.0e-128 461.5 349 63.3
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 6.0e-128 461.5 358 62.8
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 7.9e-128 461.1 374 58.8
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.0e-127 460.7 349 61.6
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.8e-127 459.9 406 57.1
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.9e-127 458.8 345 64.1
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.7e-127 457.6 303 69.0
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.5e-126 456.8 358 62.0
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 2.5e-126 456.1 345 62.3
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 7.4e-126 454.5 375 57.9
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 9.6e-126 454.1 349 63.0
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 9.6e-126 454.1 361 60.1
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 2.1e-125 453.0 350 64.6
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.8e-125 452.6 359 62.1
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 3.1e-124 449.1 333 63.7
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 4.1e-124 448.7 321 66.7
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 2.0e-123 446.4 357 60.8
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.8e-123 444.9 309 66.7
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 6.5e-122 441.4 315 65.4
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 1.9e-121 439.9 321 63.2
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 2.5e-121 439.5 319 66.5
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 2.5e-121 439.5 321 63.6
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 2.5e-121 439.5 304 67.4
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.2e-121 438.7 334 62.9
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 5.5e-121 438.3 278 71.9
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.2e-120 437.2 301 65.8
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.7e-119 431.4 303 65.7
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.3e-117 427.2 291 72.9
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.1e-112 409.8 263 71.5
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 6.3e-109 398.3 306 62.4
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-108 396.0 337 58.8
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 1.2e-107 394.0 321 57.9
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 4.5e-107 392.1 345 56.8
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.0e-98 364.4 378 50.8
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 6.5e-98 361.7 246 67.5
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.0e-95 354.4 249 67.5
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.0e-95 352.4 252 66.3
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 6.7e-95 351.7 232 70.7
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.8e-93 345.5 382 48.7
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.1e-92 344.4 326 53.4
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 2.7e-91 339.7 247 66.4
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.5e-89 334.0 373 47.2
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 7.2e-89 331.6 235 65.5
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 1.2e-88 330.9 303 51.2
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.2e-88 330.9 294 57.8
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 2.7e-88 329.7 357 48.7
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.7e-88 328.9 402 45.0
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 1.0e-87 327.8 358 47.5
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.3e-87 326.6 383 46.7
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 5.4e-84 315.5 208 67.3
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 2.0e-83 313.5 218 69.3
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 5.9e-83 312.0 196 77.0
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 7.7e-83 311.6 245 60.8
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 6.3e-77 292.0 192 68.2
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 7.0e-76 288.5 274 52.9
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.9e-74 283.1 219 62.6
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 6.6e-74 282.0 302 49.0
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.5e-73 280.0 193 68.9
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.2e-72 277.7 277 48.7
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 9.8e-70 268.1 194 66.0
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.3e-66 257.7 193 64.8
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 2.0e-62 243.8 328 43.0
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 1.7e-58 230.7 134 76.1
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 1.2e-48 198.0 157 65.0
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 9.9e-46 188.3 160 59.4
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.9e-45 186.8 358 30.4
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.0e-42 178.3 208 50.5
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.3e-42 177.2 126 62.7
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 5.1e-42 176.0 89 91.0
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 3.1e-39 166.8 325 37.2
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 6.8e-39 165.6 226 36.3
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 5.4e-36 156.0 302 28.8
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 2.1e-35 154.1 116 63.8
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.3e-29 134.8 340 30.9
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 4.8e-24 116.3 207 32.4
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.0e-14 84.3 77 51.9
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 5.8e-14 82.8 61 57.4
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 3.2e-12 77.0 75 50.7
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 3.5e-11 73.6 49 65.3
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 6.0e-11 72.8 69 49.3
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.3e-10 71.6 69 49.3
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 9.6e-09 65.5 73 47.9
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.3e-07 59.7 76 46.1
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.5e-06 58.2 43 55.8
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.6e-06 55.8 43 53.5
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.0e-05 55.5 40 57.5


User provided reference genes

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