Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 1.6e-119 433.3 333 100.0
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 6.5e-100 368.2 337 87.8
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 4.7e-90 335.5 335 74.9
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 5.0e-84 315.5 335 74.6
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 5.0e-84 315.5 335 74.6
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 1.1e-83 314.3 337 74.8
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 7.2e-83 311.6 337 74.8
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 7.2e-83 311.6 337 74.8
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 1.5e-80 303.9 346 78.9
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 3.4e-80 302.8 334 62.6
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 2.7e-77 293.1 351 77.8
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 1.7e-76 290.4 333 64.6
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 1.1e-75 287.7 333 64.6
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 5.5e-75 285.4 339 74.6
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 2.1e-74 283.5 333 72.1
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 8.0e-74 281.6 344 72.1
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 5.2e-73 278.9 334 67.1
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 4.5e-69 265.8 333 61.6
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 9.5e-59 231.5 353 60.6
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 2.6e-48 196.8 314 51.9
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 7.6e-48 195.3 310 53.2
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 8.3e-47 191.8 297 52.2
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 8.3e-47 191.8 315 53.0
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 7.1e-46 188.7 326 46.6
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 2.7e-45 186.8 335 46.9
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 4.6e-45 186.0 310 49.4
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 2.3e-44 183.7 314 45.9
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 1.1e-43 181.4 332 53.9
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.5e-43 180.3 346 48.8
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 4.3e-43 179.5 332 55.4
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 4.3e-43 179.5 302 53.6
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 5.6e-43 179.1 322 46.9
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 7.3e-43 178.7 332 53.6
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 1.2e-42 177.9 328 45.7
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.8e-42 176.8 361 47.6
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 1.1e-41 174.9 320 47.5
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.4e-41 174.5 348 41.1
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.4e-41 174.5 355 41.7
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 1.4e-41 174.5 356 46.9
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 3.1e-41 173.3 338 48.5
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 4.0e-41 172.9 297 50.8
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 5.2e-41 172.6 301 52.2
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 8.9e-41 171.8 309 51.5
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 1.2e-40 171.4 324 48.1
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 1.2e-40 171.4 360 40.6
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.4e-40 169.9 360 40.3
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.4e-40 169.9 355 41.1
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 3.4e-40 169.9 330 46.7
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 4.4e-40 169.5 322 46.3
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 7.6e-40 168.7 307 49.5
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 2.2e-39 167.2 304 52.6
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 3.8e-39 166.4 336 46.7
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 3.8e-39 166.4 313 43.1
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 1.1e-38 164.9 304 56.9
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 1.9e-38 164.1 326 47.2
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 2.4e-38 163.7 313 46.6
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 7.1e-38 162.2 310 44.8
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 9.3e-38 161.8 328 47.0
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 1.6e-37 161.0 334 47.3
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 2.7e-37 160.2 313 50.8
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 4.6e-37 159.5 309 46.6
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 6.0e-37 159.1 319 47.3
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 6.0e-37 159.1 352 44.0
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 6.0e-37 159.1 313 43.1
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 7.8e-37 158.7 325 43.4
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 1.0e-36 158.3 334 47.9
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 1.3e-36 157.9 346 40.8
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 3.0e-36 156.8 333 44.1
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 6.6e-36 155.6 364 42.0
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 8.7e-36 155.2 337 41.8
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 1.1e-35 154.8 327 45.0
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 1.5e-35 154.5 340 40.9
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 1.9e-35 154.1 341 43.4
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 1.9e-35 154.1 342 43.6
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 3.3e-35 153.3 314 42.4
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 4.3e-35 152.9 318 42.8
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 2.8e-34 150.2 223 63.2
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 4.8e-34 149.4 313 44.4
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 6.2e-34 149.1 344 43.9
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 6.2e-34 149.1 317 41.6
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 8.1e-34 148.7 329 46.2
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 2.4e-33 147.1 357 43.4
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 3.1e-33 146.7 377 40.3
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 3.1e-33 146.7 341 40.5
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 6.9e-33 145.6 319 41.4
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 5.8e-32 142.5 283 49.5
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 5.8e-32 142.5 329 42.9
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 7.6e-32 142.1 329 44.7
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 7.9e-29 132.1 299 49.2
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 6.6e-28 129.0 334 52.1
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.1e-27 128.3 257 49.4
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 3.3e-27 126.7 314 45.5
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 9.6e-27 125.2 318 45.0
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 2.1e-26 124.0 296 35.5
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 1.8e-25 120.9 313 43.1
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 9.0e-25 118.6 344 35.5
AUR62038095 Chenopodium quinoa HOM05D006303 ORTHO05D008007 1.2e-24 118.2 167 48.5
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 1.3e-23 114.8 318 41.8
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 2.9e-23 113.6 314 44.3
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 2.9e-23 113.6 326 43.3
Nn3g18018 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.9e-23 113.6 157 51.0
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 1.1e-22 111.7 324 41.4
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 2.4e-22 110.5 323 43.7
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 4.2e-22 109.8 329 52.3
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 7.1e-22 109.0 322 43.5
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 2.1e-21 107.5 359 33.7
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 1.0e-20 105.1 340 38.8
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 3.9e-20 103.2 194 45.9
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 8.7e-20 102.1 158 47.5
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 3.3e-19 100.1 296 46.3
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 7.4e-19 99.0 313 40.9
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 3.7e-18 96.7 299 31.8
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 2.4e-17 94.0 321 41.1
SGA_v2.0_scaffold10G05105 Striga asiatica HOM05D006303 ORTHO05D008007 2.4e-17 94.0 197 42.1
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 4.5e-16 89.7 313 40.6
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 1.7e-15 87.8 88 56.8
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 3.2e-14 83.6 88 54.5
SGA_v2.0_scaffold257G45734 Striga asiatica HOM05D006303 ORTHO05D008007 7.9e-13 79.0 204 35.8
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 1.1e-11 75.1 184 38.0
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 1.9e-11 74.3 151 38.4
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 3.4e-08 63.5 62 54.8
Nn3g18017 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.3e-07 61.6 32 90.6
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 5.5e-06 56.2 83 48.2
Nn2g11148 Nelumbo nucifera HOM05D006303 ORTHO05D008007 9.3e-06 55.5 32 84.4


User provided reference genes

Program Settings