Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g21380 Schrenkiella parvula HOM05D003663 ORTHO05D010021 4.9e-54 214.2 104 100.0
Thhalv10005177m.g Eutrema salsugineum HOM05D003663 ORTHO05D010021 2.9e-46 188.3 104 84.6
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 7.9e-44 180.3 102 83.3
BolC2t11965H Brassica oleracea HOM05D003663 ORTHO05D010021 1.1e-42 176.4 102 83.3
Carub.0006s2421 Capsella rubella HOM05D003663 ORTHO05D010021 1.1e-42 176.4 105 79.0
CARHR186970 Cardamine hirsuta HOM05D003663 ORTHO05D010021 1.1e-42 176.4 105 84.8
BcaC04g23625 Brassica carinata HOM05D003663 ORTHO05D010021 2.5e-42 175.3 104 81.7
BcaNung02824 Brassica carinata HOM05D003663 ORTHO05D010021 7.3e-42 173.7 104 82.7
C02p59100 Brassica napus HOM05D003663 ORTHO05D010021 7.4e-34 147.1 102 73.5
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 1.3e-33 146.4 88 83.0
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 2.1e-33 145.6 88 83.0
Thhalv10021806m.g Eutrema salsugineum HOM05D003663 ORTHO05D010021 2.0e-31 139.0 104 65.4
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 7.6e-31 137.1 81 81.5
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.7e-30 136.0 94 75.5
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.7e-30 136.0 94 75.5
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.7e-30 136.0 94 75.5
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.7e-30 136.0 94 75.5
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 3.8e-30 134.8 79 83.5
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 3.2e-29 131.7 88 73.9
Sp3g04840 Schrenkiella parvula HOM05D003663 ORTHO05D010021 5.5e-29 131.0 107 60.7
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 3.5e-28 128.3 93 72.0
BcaB04g19233 Brassica carinata HOM05D003663 ORTHO05D010021 1.8e-27 125.9 102 62.7
BraA03t12614Z Brassica rapa HOM05D003663 ORTHO05D010021 1.8e-27 125.9 102 61.8
CARHR080410 Cardamine hirsuta HOM05D003663 ORTHO05D010021 5.1e-27 124.4 106 58.5
A03p34380 Brassica napus HOM05D003663 ORTHO05D010021 1.1e-26 123.2 102 60.8
BcaB04g19228 Brassica carinata HOM05D003663 ORTHO05D010021 3.3e-26 121.7 102 61.8
BcaC01g04309 Brassica carinata HOM05D003663 ORTHO05D010021 3.3e-26 121.7 102 61.8
C03p41850 Brassica napus HOM05D003663 ORTHO05D010021 3.3e-26 121.7 102 61.8
BolC3t16468H Brassica oleracea HOM05D003663 ORTHO05D010021 3.3e-26 121.7 102 61.8
Carub.0003s0532 Capsella rubella HOM05D003663 ORTHO05D010021 3.1e-24 115.2 110 55.5
AL3G16710 Arabidopsis lyrata HOM05D003663 ORTHO05D010021 6.9e-24 114.0 111 54.1
THA.LOC104803108 Tarenaya hassleriana HOM05D003663 ORTHO05D010021 2.0e-23 112.5 103 65.0
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 1.3e-19 99.8 59 81.4
Aa31LG5G16360 Aethionema arabicum HOM05D003663 ORTHO05D010021 1.5e-18 96.3 107 54.2
AT3G05936 Arabidopsis thaliana HOM05D003663 ORTHO05D010021 1.3e-17 93.2 89 58.4
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 2.6e-15 85.5 61 68.9
RcHm_v2.0_Chr3g0459041 Rosa chinensis HOM05D008494 ORTHO05D010021 3.8e-14 81.6 92 42.4
BcaC03g17870 Brassica carinata HOM05D011290 ORTHO05D010021 5.0e-14 81.3 64 71.9
FAN14G1748 Fragaria x ananassa HOM05D008494 ORTHO05D010021 4.6e-12 74.7 90 40.0
QL03p011411 Quercus lobata HOM05D008494 ORTHO05D010021 6.1e-12 74.3 89 44.9
VMungo1383G1264 Vigna mungo HOM05D008494 ORTHO05D010021 1.1e-10 70.1 86 40.7
Prupe.6G302200 Prunus persica HOM05D008494 ORTHO05D010021 3.3e-10 68.6 95 38.9
BraA02t08902Z Brassica rapa HOM05D003663 ORTHO05D010021 7.4e-10 67.4 44 75.0
CiPaw.02G000600 Carya illinoinensis HOM05D008494 ORTHO05D010021 7.4e-10 67.4 91 37.4
Haze_15004 Corylus avellana HOM05D008494 ORTHO05D010021 2.2e-09 65.9 92 40.2
Glyma.03G227000 Glycine max HOM05D008494 ORTHO05D010021 2.2e-09 65.9 87 42.5
Manes.08G105911 Manihot esculenta HOM05D008494 ORTHO05D010021 2.2e-09 65.9 85 42.4
Ciclev10030055m.g Citrus clementina HOM05D008494 ORTHO05D010021 3.7e-09 65.1 98 41.8
Potri.013G000100 Populus trichocarpa HOM05D008494 ORTHO05D010021 4.8e-09 64.7 97 42.3
Glyma.19G223900 Glycine max HOM05D008494 ORTHO05D010021 1.4e-08 63.2 87 40.2
MD04G1183700 Malus domestica HOM05D008494 ORTHO05D010021 1.4e-08 63.2 109 33.9
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 2.4e-08 62.4 89 40.4
Phvul.001G220800 Phaseolus vulgaris HOM05D008494 ORTHO05D010021 3.1e-08 62.0 98 37.8
Manes.09G182700 Manihot esculenta HOM05D008494 ORTHO05D010021 6.9e-08 60.8 96 38.5
Potri.005G000800 Populus trichocarpa HOM05D008494 ORTHO05D010021 6.9e-08 60.8 99 39.4
Lalb_Chr02g0147351 Lupinus albus HOM05D008494 ORTHO05D010021 1.2e-07 60.1 88 39.8
Peaxi162Scf00194g00512 Petunia axillaris HOM05D008494 ORTHO05D010021 2.0e-07 59.3 94 38.3
Oeu033225.1 Olea europaea HOM05D008494 ORTHO05D010021 2.6e-07 58.9 92 34.8
Rhsim11G0107000 Rhododendron simsii HOM05D000136 ORTHO05D000080 2.6e-07 58.9 108 34.3
TPR.G1638 Trifolium pratense HOM05D008494 ORTHO05D010021 4.5e-07 58.2 106 34.9
Aqoxy5G00626 Aquilegia oxysepala HOM05D008494 ORTHO05D010021 1.3e-06 56.6 92 37.0


User provided reference genes

Program Settings