Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 4.5e-194 681.0 332 100.0
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 4.7e-175 617.8 335 90.7
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 4.6e-170 601.3 336 86.6
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 2.1e-167 592.4 335 85.1
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 1.5e-160 569.7 337 83.1
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 7.3e-160 567.4 335 83.0
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 5.1e-153 544.7 309 85.1
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 8.6e-153 543.9 339 81.4
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 1.4e-150 536.6 343 79.6
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 3.1e-150 535.4 343 79.0
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 1.1e-144 516.9 340 78.5
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 1.1e-144 516.9 340 78.5
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 2.5e-144 515.8 339 77.9
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 2.5e-144 515.8 335 75.5
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 3.1e-126 455.7 340 66.2
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 2.1e-122 443.0 340 64.7
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 1.3e-121 440.3 336 64.3
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 6.7e-121 438.0 335 63.9
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 1.1e-120 437.2 347 64.0
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 1.1e-120 437.2 341 64.5
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 1.1e-120 437.2 336 64.0
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 1.5e-120 436.8 335 64.2
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 4.3e-120 435.3 332 64.8
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 5.6e-120 434.9 340 64.1
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 7.4e-120 434.5 339 63.4
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 7.4e-120 434.5 332 64.5
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 4.8e-119 431.8 333 63.4
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 1.4e-118 430.3 337 64.7
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 3.1e-118 429.1 332 63.0
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 3.1e-118 429.1 329 64.4
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 3.1e-118 429.1 339 64.6
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 4.0e-118 428.7 338 60.9
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 9.0e-118 427.6 332 62.7
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 9.0e-118 427.6 329 64.1
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 2.0e-117 426.4 342 61.4
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 4.5e-117 425.2 328 63.1
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 5.8e-117 424.9 332 62.7
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 5.8e-117 424.9 335 62.7
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 7.6e-117 424.5 342 61.7
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 2.2e-116 422.9 301 66.8
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 6.5e-116 421.4 311 65.9
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 8.4e-116 421.0 336 63.1
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 1.4e-115 420.2 338 63.0
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 4.2e-115 418.7 337 62.6
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 9.3e-115 417.5 332 62.3
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 9.3e-115 417.5 333 63.4
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 1.2e-114 417.2 338 61.8
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 1.2e-114 417.2 328 62.2
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 1.6e-114 416.8 350 61.4
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 2.7e-114 416.0 311 65.9
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 2.7e-114 416.0 332 62.0
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 3.5e-114 415.6 328 64.0
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 4.6e-114 415.2 361 59.6
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 7.9e-114 414.5 351 61.8
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 1.0e-113 414.1 309 67.3
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 1.3e-113 413.7 340 61.2
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 1.3e-113 413.7 344 62.5
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 2.3e-113 412.9 333 62.5
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 2.3e-113 412.9 335 61.2
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 5.1e-113 411.8 316 62.0
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 6.7e-113 411.4 331 61.3
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 8.7e-113 411.0 342 62.0
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 1.1e-112 410.6 347 60.5
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 2.5e-112 409.5 309 64.4
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 2.5e-112 409.5 323 61.6
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 2.5e-112 409.5 333 61.0
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 2.5e-112 409.5 343 60.6
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 6.3e-111 404.8 308 64.6
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 3.1e-110 402.5 299 66.2
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 5.3e-110 401.7 310 61.3
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 1.2e-109 400.6 310 61.0
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 1.5e-109 400.2 295 64.1
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 5.9e-109 398.3 309 61.8
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 1.7e-108 396.7 315 65.7
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 2.2e-108 396.4 304 62.2
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 2.2e-108 396.4 352 57.7
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 2.9e-108 396.0 344 57.8
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 8.5e-108 394.4 311 62.7
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 9.3e-107 391.0 344 58.7
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.7e-106 389.4 312 64.4
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 4.6e-106 388.7 349 57.9
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 5.1e-105 385.2 332 59.9
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 6.3e-103 378.3 348 57.2
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 6.3e-103 378.3 334 59.0
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 8.2e-103 377.9 332 59.3
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.8e-102 376.7 298 62.1
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 8.5e-100 367.9 286 62.9
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 1.1e-99 367.5 268 65.3
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.9e-99 366.7 286 65.4
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 7.9e-98 361.3 303 57.8
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 6.7e-97 358.2 215 77.2
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 6.7e-97 358.2 307 59.6
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 2.0e-93 346.7 233 69.1
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 1.3e-92 344.0 246 65.9
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 2.2e-92 343.2 269 62.1
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 6.5e-92 341.7 319 55.5
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 2.0e-88 330.1 345 51.0
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 1.8e-86 323.6 311 52.7
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 1.0e-84 317.8 278 59.0
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 3.5e-77 292.7 338 47.9
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 5.5e-75 285.4 248 60.5
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 4.1e-70 269.2 290 47.6
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 2.9e-68 263.1 233 49.8
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 2.1e-66 256.9 283 46.6
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 1.0e-65 254.6 299 44.1
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 1.2e-64 251.1 212 59.0
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 3.5e-61 239.6 223 57.8
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 5.6e-59 232.3 242 44.6
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 1.8e-57 227.3 224 53.6
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 3.0e-57 226.5 307 43.0
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 8.9e-57 224.9 209 55.5
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 1.7e-47 194.1 140 75.7
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 2.9e-47 193.4 273 40.3
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 1.2e-45 188.0 327 37.3
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 1.6e-42 177.6 161 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2555 Anthoceros agrestis HOM05D006406 ORTHO05D007883 2.6e-32 143.7 114 57.0
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 1.3e-31 141.4 185 45.9
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 4.4e-24 116.3 151 49.0
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 1.5e-19 101.3 53 84.9
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 5.4e-14 82.8 162 38.3
Cre09.g392700 Chlamydomonas reinhardtii HOM05D006406 ORTHO05D007883 4.0e-09 66.6 101 40.6
SMO172G0225 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 4.2e-06 56.6 119 27.7
Aqoxy601s001 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 9.3e-06 55.5 33 69.7


User provided reference genes

Program Settings