Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 2.4e-190 668.7 339 100.0
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 5.7e-184 647.5 339 96.5
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.0e-172 610.1 339 91.7
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 4.7e-170 601.3 339 89.1
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 2.8e-167 592.0 340 89.7
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 2.8e-167 592.0 340 89.7
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 6.9e-166 587.4 341 88.6
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 1.7e-164 582.8 342 89.8
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 1.7e-164 582.8 342 89.8
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 3.3e-160 568.5 336 86.9
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 7.7e-149 530.8 347 80.4
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 1.4e-145 520.0 345 79.4
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 1.5e-131 473.4 347 72.3
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 2.5e-131 472.6 313 75.4
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 5.2e-129 464.9 297 78.5
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 3.4e-128 462.2 354 69.5
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 5.8e-128 461.5 352 67.9
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 7.5e-128 461.1 347 69.2
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.7e-127 459.9 299 75.6
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.7e-127 459.9 350 67.7
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 2.2e-127 459.5 348 69.0
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 2.2e-127 459.5 347 67.7
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 1.4e-126 456.8 351 69.2
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 1.9e-126 456.4 329 70.8
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 3.2e-126 455.7 300 74.3
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 7.0e-126 454.5 345 68.7
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 9.2e-126 454.1 345 68.1
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 1.6e-125 453.4 321 71.3
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.7e-125 452.6 343 70.0
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 2.7e-125 452.6 343 70.0
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 1.0e-124 450.7 347 68.6
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.0e-124 450.7 336 69.6
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.3e-124 450.3 349 67.6
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 6.6e-124 448.0 324 71.6
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 1.1e-123 447.2 348 67.5
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.1e-123 447.2 352 66.8
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 1.5e-123 446.8 345 66.7
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.5e-123 446.0 352 66.8
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 3.3e-123 445.7 297 75.4
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 5.6e-123 444.9 297 75.1
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 2.1e-122 443.0 351 67.5
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 2.1e-122 443.0 342 70.2
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 2.1e-122 443.0 298 73.2
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 1.8e-121 439.9 323 70.6
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 3.1e-121 439.1 351 67.2
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 4.0e-121 438.7 355 65.4
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.2e-121 438.3 365 64.4
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 5.2e-121 438.3 311 70.4
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 6.8e-121 438.0 320 69.4
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 6.8e-121 438.0 326 67.8
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 6.8e-121 438.0 252 83.3
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 2.6e-120 436.0 329 69.9
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 2.6e-120 436.0 344 64.8
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 3.4e-120 435.6 321 68.2
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 3.4e-120 435.6 343 65.3
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 5.8e-120 434.9 327 68.2
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 9.8e-120 434.1 352 65.3
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 2.9e-119 432.6 391 60.9
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 8.3e-119 431.0 341 68.3
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 1.4e-118 430.3 298 71.8
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.9e-118 429.9 345 66.4
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 2.4e-118 429.5 303 70.0
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 7.0e-118 427.9 300 73.0
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 1.0e-116 424.1 300 70.0
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.0e-116 424.1 322 67.4
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 6.6e-116 421.4 300 70.7
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 2.1e-114 416.4 337 66.8
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 2.8e-114 416.0 307 68.7
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 1.1e-113 414.1 311 69.5
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 1.1e-113 414.1 349 63.3
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 2.3e-113 412.9 320 65.0
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 8.9e-113 411.0 354 63.3
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 8.9e-113 411.0 252 78.6
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 2.0e-112 409.8 354 62.1
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 2.6e-112 409.5 335 65.4
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 5.8e-112 408.3 255 75.3
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.7e-111 406.8 350 62.6
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 2.2e-111 406.4 340 64.1
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 2.2e-111 406.4 297 68.4
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 2.9e-111 406.0 345 63.8
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 8.3e-111 404.4 298 67.1
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 8.3e-111 404.4 309 67.3
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 1.6e-109 400.2 348 63.2
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 3.5e-109 399.1 325 64.9
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 6.0e-109 398.3 310 69.4
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.0e-108 397.5 225 84.9
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 1.9e-107 393.3 341 63.3
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 5.6e-107 391.7 334 62.6
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 8.9e-105 384.4 297 67.7
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 8.4e-103 377.9 285 67.4
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 2.1e-98 363.2 298 64.4
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 6.9e-97 358.2 355 57.2
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 8.7e-92 341.3 358 56.1
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 5.3e-89 332.0 335 51.6
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 3.1e-81 306.2 305 51.5
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 9.0e-81 304.7 364 52.2
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 2.2e-79 300.1 309 50.8
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 2.2e-79 300.1 252 59.5
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 1.5e-75 287.3 163 84.0
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 3.3e-75 286.2 170 78.8
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 1.3e-71 274.2 281 48.8
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.0e-68 263.1 184 69.0
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.8e-63 246.1 141 80.1
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 1.0e-60 238.0 221 48.9
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 2.2e-55 220.3 132 81.8
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 1.6e-53 214.2 126 83.3
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 1.6e-53 214.2 126 83.3
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 2.4e-49 200.3 222 54.1
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 9.1e-49 198.4 132 73.5
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 1.2e-45 188.0 308 36.7
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 1.4e-36 157.9 322 32.9
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 6.3e-34 149.1 241 37.3
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 1.0e-31 141.7 107 70.1
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 2.1e-29 134.0 166 52.4
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 7.7e-24 115.5 200 41.5
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 1.7e-23 114.4 93 66.7
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 5.5e-22 109.4 80 66.2
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 8.9e-20 102.1 53 83.0
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 6.3e-18 95.9 116 56.0
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 1.9e-14 84.3 61 63.9
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 3.6e-13 80.1 128 41.4
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 8.9e-12 75.5 39 94.9
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 8.9e-12 75.5 39 94.9
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 1.2e-11 75.1 128 39.8
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 2.9e-10 70.5 38 81.6
Aa31LG11G9290 Aethionema arabicum HOM05D006315 ORTHO05D058479 4.3e-06 56.6 42 69.0
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 5.6e-06 56.2 51 52.9


User provided reference genes

Program Settings