Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 4.5e-217 757.7 393 100.0
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.5e-191 672.9 383 93.2
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.5e-191 672.9 381 92.4
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 5.5e-191 671.0 382 91.6
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.7e-190 668.7 381 91.3
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 2.0e-188 662.5 381 90.0
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.3e-187 659.8 382 91.6
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 1.7e-187 659.4 381 90.0
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 2.2e-187 659.1 381 90.0
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 3.7e-187 658.3 381 89.8
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 3.5e-185 651.7 382 90.3
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 3.5e-185 651.7 382 90.3
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 3.6e-182 641.7 381 87.4
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 8.9e-181 637.1 381 86.6
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 3.4e-180 635.2 381 86.6
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 4.6e-177 624.8 381 84.8
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 9.5e-175 617.1 381 86.1
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 1.1e-165 587.0 386 79.5
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 9.9e-156 553.9 387 76.0
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 8.9e-149 530.8 385 71.9
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.7e-147 526.6 386 72.8
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 1.1e-146 523.9 385 72.2
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.4e-146 523.5 386 71.5
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.2e-145 520.4 385 71.2
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 6.0e-145 518.1 386 71.0
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 7.8e-145 517.7 386 71.2
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.3e-144 516.9 386 71.5
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 2.3e-144 516.2 385 70.9
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 6.6e-144 514.6 385 70.4
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.5e-143 513.5 385 70.1
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 1.3e-142 510.4 385 70.1
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.3e-142 510.4 386 69.9
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.6e-142 510.0 383 71.8
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.1e-142 509.6 385 69.4
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 2.1e-142 509.6 385 70.1
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 2.8e-142 509.2 388 69.8
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 8.1e-142 507.7 385 70.6
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 8.1e-142 507.7 385 69.9
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.4e-141 506.9 385 69.9
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 5.3e-141 505.0 385 69.9
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 9.0e-141 504.2 385 69.9
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.2e-140 503.8 385 69.1
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 2.6e-140 502.7 379 70.2
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 3.4e-140 502.3 385 69.4
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 3.4e-140 502.3 385 68.8
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 5.8e-140 501.5 385 69.6
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 5.8e-140 501.5 385 68.3
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 7.6e-140 501.1 404 67.6
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 9.9e-140 500.7 385 69.1
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 9.9e-140 500.7 385 69.9
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 9.9e-140 500.7 384 69.0
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 2.2e-139 499.6 385 69.4
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 2.9e-139 499.2 385 67.8
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 4.9e-139 498.4 385 68.3
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 6.4e-139 498.0 386 69.2
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 8.4e-139 497.7 385 67.8
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 5.4e-138 495.0 383 67.9
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 7.1e-138 494.6 387 68.0
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 7.1e-138 494.6 387 69.0
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 7.1e-138 494.6 385 67.5
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 9.3e-138 494.2 385 68.6
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 9.3e-138 494.2 385 68.3
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 9.3e-138 494.2 385 68.6
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.2e-137 493.8 385 68.8
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 1.6e-137 493.4 390 69.0
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.1e-137 493.0 385 68.3
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 7.9e-137 491.1 386 66.8
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.0e-136 490.7 387 68.0
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.8e-136 490.0 385 68.6
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 3.9e-136 488.8 385 67.5
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 6.7e-136 488.0 385 68.6
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.5e-135 486.9 385 67.8
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.9e-135 486.5 385 67.5
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.3e-135 485.7 385 67.5
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 5.6e-135 485.0 385 67.8
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 7.4e-135 484.6 387 65.1
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 1.3e-134 483.8 386 67.4
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 8.1e-134 481.1 386 68.1
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 8.1e-134 481.1 383 65.8
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.4e-133 480.3 386 66.1
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 2.4e-133 479.6 385 67.3
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.4e-133 479.6 385 66.8
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.0e-133 478.8 385 67.0
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.3e-133 478.4 385 67.3
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.5e-132 476.9 385 66.2
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 4.5e-132 475.3 385 65.2
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.3e-131 473.8 398 64.8
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 1.4e-130 470.3 386 65.3
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.2e-129 467.2 410 64.1
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.6e-129 466.8 385 66.5
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 1.6e-129 466.8 385 65.7
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.3e-128 463.8 417 62.4
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 3.0e-128 462.6 385 63.1
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.9e-128 462.2 417 62.4
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.9e-128 462.2 417 61.9
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 3.9e-128 462.2 385 64.2
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 3.9e-128 462.2 385 64.2
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 6.7e-128 461.5 385 66.2
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.5e-127 459.5 417 61.9
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 4.3e-127 458.8 352 68.8
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 3.7e-126 455.7 386 62.7
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 8.1e-126 454.5 385 62.9
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.1e-125 454.1 385 63.6
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.3e-125 451.8 385 62.6
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.5e-124 450.3 385 62.6
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.3e-123 447.2 352 67.9
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 3.8e-123 445.7 352 68.5
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 4.9e-123 445.3 352 66.8
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 1.2e-121 440.7 386 60.9
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.1e-117 427.6 390 59.0
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 5.3e-117 425.2 386 62.2
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 9.0e-117 424.5 390 57.9
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.3e-115 420.6 337 66.2
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 1.1e-114 417.5 333 66.4
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 7.2e-114 414.8 379 58.8
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 1.6e-113 413.7 388 55.9
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 3.1e-109 399.4 402 56.2
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 4.5e-108 395.6 399 57.1
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.2e-106 389.4 383 57.7
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 7.2e-106 388.3 383 57.2
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 6.7e-104 381.7 393 53.9
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 9.1e-101 371.3 383 56.4
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.4e-96 357.5 295 60.7
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 1.0e-91 341.3 414 48.1
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.3e-91 340.9 273 67.4
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 4.4e-87 325.9 445 42.7
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.9e-82 310.5 367 46.6
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 5.4e-77 292.4 267 59.6
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 7.2e-74 282.0 301 56.5
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.3e-72 276.9 227 66.1
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 3.4e-71 273.1 388 41.8
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 5.4e-61 239.2 461 35.8
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 3.9e-51 206.5 238 45.8
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 5.6e-50 202.6 164 65.9
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.2e-45 186.8 168 59.5
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 7.3e-42 175.6 149 66.4
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.7e-35 154.5 386 30.3
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 5.6e-34 149.4 172 54.7
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 2.4e-32 144.1 123 63.4
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 8.4e-30 135.6 167 47.9
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 3.6e-25 120.2 150 49.3
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.8e-24 117.9 84 69.0
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 3.1e-24 117.1 108 55.6
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 9.0e-24 115.5 213 35.2
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-23 114.8 156 46.8
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-21 107.5 137 50.4
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.5e-20 103.6 121 51.2
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.0e-19 102.1 74 64.9
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 6.2e-17 92.8 75 58.7
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-16 92.0 128 47.7
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 4.0e-16 90.1 128 47.7
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 2.0e-15 87.8 81 54.3
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 1.3e-14 85.1 107 49.5
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-14 84.7 83 54.2
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 4.9e-14 83.2 91 49.5
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 4.2e-13 80.1 127 43.3
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 3.5e-12 77.0 91 50.5
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 8.7e-11 72.4 44 81.8
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.9e-10 71.2 47 68.1
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 9.6e-10 68.9 42 83.3
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 9.0e-08 62.4 101 41.6
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 9.0e-08 62.4 36 83.3
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 2.6e-07 60.8 38 78.9
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 1.7e-06 58.2 38 73.7


User provided reference genes

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