Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 6.8e-187 657.1 324 100.0
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 4.6e-167 591.3 325 90.2
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 3.9e-166 588.2 325 90.2
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 3.9e-166 588.2 325 89.2
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 8.7e-166 587.0 327 89.9
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 2.1e-164 582.4 340 86.5
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 4.0e-163 578.2 340 86.2
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.4e-160 569.7 334 85.6
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 2.1e-156 555.8 313 87.9
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 8.1e-156 553.9 312 86.9
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 2.0e-154 549.3 312 86.5
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 5.1e-150 534.6 312 84.0
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 5.1e-134 481.5 320 77.8
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 6.3e-116 421.4 318 69.2
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.0e-102 377.5 314 63.1
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 2.3e-102 376.3 347 58.2
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 6.8e-102 374.8 314 61.5
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.1e-99 367.5 318 59.1
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 5.4e-99 365.2 321 60.4
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 4.5e-98 362.1 319 60.8
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 1.3e-97 360.5 317 61.2
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 2.9e-97 359.4 319 60.5
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 2.9e-97 359.4 319 60.5
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 3.8e-97 359.0 317 59.0
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 2.5e-96 356.3 281 62.6
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 2.5e-96 356.3 323 58.8
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 6.8e-94 348.2 228 74.1
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 8.9e-94 347.8 317 56.8
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 1.5e-93 347.1 254 66.9
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 4.4e-93 345.5 230 71.7
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 4.4e-93 345.5 271 63.1
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 5.7e-93 345.1 273 62.3
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 7.5e-93 344.7 315 57.8
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 1.3e-92 344.0 314 58.6
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 1.7e-92 343.6 271 62.7
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 1.1e-91 340.9 276 61.6
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 3.2e-91 339.3 317 56.8
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 3.2e-91 339.3 321 56.7
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 3.2e-91 339.3 312 58.0
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 3.2e-91 339.3 314 56.7
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 5.4e-91 338.6 234 70.5
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 5.4e-91 338.6 234 70.5
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.0e-90 336.7 290 58.6
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 2.7e-90 336.3 237 66.7
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.7e-90 336.3 317 56.8
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 2.7e-90 336.3 380 49.7
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 4.5e-90 335.5 231 68.8
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 3.9e-89 332.4 223 72.2
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.9e-89 332.4 276 60.5
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 8.6e-89 331.3 233 67.4
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 1.1e-88 330.9 272 61.0
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.5e-88 329.7 317 54.6
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 4.3e-88 328.9 275 60.7
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.3e-88 328.9 290 57.9
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 5.6e-88 328.6 223 69.5
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 9.5e-88 327.8 275 60.4
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 9.5e-88 327.8 227 70.0
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 1.2e-87 327.4 216 70.8
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.1e-87 325.1 295 57.3
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 8.0e-87 324.7 281 60.1
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.4e-86 323.9 234 67.9
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 2.3e-86 323.2 312 54.2
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 1.2e-85 320.9 283 57.6
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 3.4e-85 319.3 300 57.3
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 5.8e-85 318.5 237 65.4
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.3e-84 317.4 341 52.2
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.4e-83 313.9 307 54.4
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 2.0e-82 310.1 194 74.7
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 3.5e-82 309.3 201 71.6
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 3.5e-82 309.3 321 53.3
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 4.6e-82 308.9 242 63.2
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 1.0e-81 307.8 210 70.5
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 1.3e-81 307.4 309 50.8
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.2e-79 300.8 311 55.0
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 2.8e-79 299.7 287 56.8
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 1.4e-78 297.4 210 64.3
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 5.2e-78 295.4 174 81.0
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 8.9e-78 294.7 269 56.9
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 1.2e-77 294.3 291 59.8
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 7.1e-75 285.0 270 57.0
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 9.2e-75 284.6 286 55.6
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 2.7e-74 283.1 199 66.3
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 4.6e-74 282.3 294 53.7
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 3.6e-71 272.7 257 60.7
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 6.2e-71 271.9 213 64.3
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 5.2e-70 268.9 222 59.9
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 1.3e-65 254.2 317 47.6
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 2.8e-63 246.5 179 67.6
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 5.1e-57 225.7 299 44.8
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 3.6e-55 219.5 165 64.2
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 6.2e-55 218.8 380 36.8
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 8.1e-55 218.4 202 55.0
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 1.4e-54 217.6 168 63.7
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 2.4e-54 216.9 248 46.0
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 7.6e-53 211.8 214 48.1
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 1.6e-50 204.1 270 39.3
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 2.1e-47 193.7 199 48.2
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.4e-46 191.0 156 62.2
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 1.7e-44 184.1 269 44.6
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 2.9e-44 183.3 221 44.3
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.2e-42 177.9 158 59.5
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 3.5e-42 176.4 261 42.5
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.5e-40 170.2 362 37.0
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 1.4e-38 164.5 129 64.3
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 1.3e-36 157.9 248 41.5
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 8.4e-36 155.2 150 52.7
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 4.8e-31 139.4 84 83.3
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 8.2e-31 138.7 253 39.1
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 6.9e-30 135.6 112 66.1
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 9.0e-30 135.2 82 82.9
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 9.0e-30 135.2 82 82.9
C03p78440 Brassica napus HOM05D012085 ORTHO05D006095 2.2e-28 130.6 82 78.0
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 3.8e-28 129.8 112 64.3
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 3.8e-28 129.8 83 79.5
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 2.5e-27 127.1 69 79.7
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 6.1e-26 122.5 69 81.2
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 1.9e-24 117.5 204 32.4
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 1.5e-21 107.8 57 87.7
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 2.0e-21 107.5 59 84.7
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 1.7e-20 104.4 59 84.7
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 3.8e-20 103.2 57 87.7
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 5.0e-20 102.8 58 84.5
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 2.5e-19 100.5 59 81.4
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 2.5e-19 100.5 59 81.4
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 2.5e-19 100.5 111 51.4
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 4.2e-19 99.8 59 81.4
BcaC09g50421 Brassica carinata HOM05D004613 ORTHO05D006095 4.2e-19 99.8 57 82.5
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 4.2e-19 99.8 59 81.4
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 1.2e-18 98.2 55 85.5
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 5.7e-16 89.4 49 85.7
C03p71850 Brassica napus HOM05D004613 ORTHO05D006095 1.7e-15 87.8 56 75.0
C09p20670 Brassica napus HOM05D004613 ORTHO05D006095 1.7e-15 87.8 56 78.6
C04p31600 Brassica napus HOM05D004613 ORTHO05D006095 2.8e-15 87.0 59 72.9
C02p33910 Brassica napus HOM05D004613 ORTHO05D006095 1.8e-14 84.3 51 80.4
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 4.5e-13 79.7 49 81.6
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 1.0e-12 78.6 41 82.9
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 6.5e-12 75.9 39 87.2
BcaC02g11915 Brassica carinata HOM05D004613 ORTHO05D014940 8.5e-12 75.5 40 82.5
BcaB01g02574 Brassica carinata HOM05D001081 ORTHO05D004708 1.4e-11 74.7 51 74.5
BcaB02g10346 Brassica carinata HOM05D004613 ORTHO05D014940 5.5e-11 72.8 41 78.0
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 5.5e-11 72.8 42 73.8
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 7.2e-11 72.4 168 31.5
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 9.4e-11 72.0 85 43.5
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 9.4e-11 72.0 49 65.3
BcaC03g15600 Brassica carinata HOM05D008340 ORTHO05D014940 2.1e-10 70.9 39 79.5
C08p07130 Brassica napus HOM05D004613 ORTHO05D014940 2.1e-10 70.9 41 80.5
BolC9t56574H Brassica oleracea HOM05D004613 ORTHO05D014940 3.6e-10 70.1 41 78.0
BcaC04g20970 Brassica carinata HOM05D004613 ORTHO05D014940 7.9e-10 68.9 39 79.5
C07p10570 Brassica napus HOM05D004613 ORTHO05D014940 7.9e-10 68.9 69 55.1
BcaB01g02118 Brassica carinata HOM05D004613 ORTHO05D014940 4.4e-08 63.2 39 71.8
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 4.8e-07 59.7 50 58.0
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 4.8e-07 59.7 50 58.0
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 4.8e-07 59.7 50 58.0
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 4.8e-07 59.7 50 58.0
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 4.8e-07 59.7 50 58.0
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 4.8e-07 59.7 50 58.0
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 4.8e-07 59.7 50 58.0
BcaC02g11089 Brassica carinata HOM05D000249 ORTHO05D032228 4.1e-06 56.6 36 69.4


User provided reference genes

Program Settings