Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 3.4e-267 924.9 629 100.0
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 5.8e-174 615.1 630 66.8
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 4.6e-163 578.9 632 64.7
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 6.2e-160 568.5 630 61.7
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 7.1e-156 555.1 629 65.7
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 1.3e-149 534.3 631 59.3
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 3.8e-149 532.7 630 65.2
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 1.5e-145 520.8 631 59.7
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 1.1e-129 468.0 631 52.8
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 5.3e-119 432.6 632 60.9
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 7.0e-103 379.0 631 50.4
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 1.0e-93 348.6 629 49.1
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 3.6e-91 340.1 632 50.0
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.7e-88 331.3 636 40.3
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 8.3e-88 328.9 634 40.4
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.5e-84 318.2 635 43.1
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 3.3e-84 317.0 629 44.8
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.3e-77 295.0 627 47.2
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 1.6e-70 271.6 635 39.1
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 2.7e-62 244.2 630 35.4
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 2.7e-62 244.2 630 35.4
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 2.3e-58 231.1 634 41.2
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 2.9e-56 224.2 630 37.8
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 2.1e-54 218.0 633 37.9
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 4.6e-54 216.9 638 38.4
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 2.5e-52 211.1 596 29.9
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 1.2e-51 208.8 639 30.2
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 1.8e-50 204.9 589 36.5
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 2.4e-47 194.5 619 30.2
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.6e-46 191.8 639 30.4
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 2.3e-45 188.0 639 36.3
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 8.7e-45 186.0 634 38.5
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 5.6e-44 183.3 670 28.1
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.8e-42 178.3 619 29.4
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 3.4e-41 174.1 636 31.0
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 1.2e-38 165.6 635 27.7
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 3.9e-37 160.6 663 26.8
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 3.9e-37 160.6 662 25.4
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.1e-36 159.1 663 26.7
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 3.3e-36 157.5 596 26.8
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 4.3e-36 157.1 656 27.0
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 4.3e-36 157.1 639 31.9
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.3e-35 155.6 629 39.3
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 1.3e-35 155.6 666 29.4
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 5.3e-34 150.2 634 35.8
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 9.0e-34 149.4 630 27.6
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 2.6e-33 147.9 602 29.2
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 3.4e-33 147.5 288 40.3
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 4.5e-33 147.1 579 26.6
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 4.5e-33 147.1 755 26.5
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 5.8e-33 146.7 667 30.1
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 5.8e-33 146.7 616 25.3
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.3e-32 145.6 592 30.9
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.9e-32 144.4 634 30.3
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 6.4e-32 143.3 256 37.9
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.4e-31 142.1 639 34.7
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 1.4e-31 142.1 632 28.6
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 1.9e-31 141.7 634 32.6
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 3.2e-31 141.0 594 29.0
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 9.3e-31 139.4 595 24.4
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 4.6e-30 137.1 647 30.1
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 1.5e-28 132.1 618 31.7
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 7.4e-28 129.8 657 35.5
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 2.1e-27 128.3 197 40.6
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 3.7e-27 127.5 593 24.8
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 5.3e-26 123.6 588 30.6
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 6.9e-26 123.2 266 34.6
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 1.5e-25 122.1 667 24.0
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 9.9e-25 119.4 680 24.6
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 2.9e-24 117.9 608 27.5
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 3.8e-24 117.5 277 37.2
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 3.8e-24 117.5 277 37.2
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 8.4e-24 116.3 582 34.4
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 4.2e-23 114.0 269 37.2
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 7.1e-23 113.2 671 31.0
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.6e-22 112.1 681 30.4
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 3.5e-22 110.9 659 25.0
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 4.6e-22 110.5 641 23.6
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 6.7e-21 106.7 648 26.2
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 1.9e-20 105.1 629 29.6
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 7.4e-20 103.2 593 26.5
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.1e-19 101.7 586 22.9
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 3.7e-19 100.9 616 24.8
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 8.2e-19 99.8 308 28.2
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 1.8e-18 98.6 597 27.6
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.8e-18 98.6 762 24.8
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 1.8e-18 98.6 313 25.9
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 4.0e-18 97.4 603 29.9
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 6.9e-18 96.7 191 35.6
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 1.5e-17 95.5 670 25.5
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 1.5e-17 95.5 228 32.9
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.6e-17 94.7 644 26.7
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 2.6e-17 94.7 635 33.4
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.9e-16 91.3 586 29.0
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.9e-16 90.5 586 28.7
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 6.5e-16 90.1 662 21.1
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 2.5e-15 88.2 627 23.8
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 4.2e-15 87.4 586 28.5
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 7.1e-15 86.7 225 32.0
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 7.1e-15 86.7 225 32.0
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 9.3e-15 86.3 752 23.4
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.6e-14 85.5 586 28.7
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 2.1e-14 85.1 623 23.9
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 6.0e-14 83.6 322 30.1
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 8.7e-13 79.7 313 24.0
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.9e-12 78.6 120 37.5
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 3.3e-12 77.8 618 24.1
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 4.3e-12 77.4 173 32.9
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 4.3e-12 77.4 714 22.5
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 5.7e-12 77.0 161 33.5
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 9.7e-12 76.3 120 36.7
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 4.8e-11 73.9 144 35.4
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 1.1e-10 72.8 123 37.4
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 1.1e-10 72.8 152 32.9
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.4e-10 72.4 648 24.5
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 1.4e-10 72.4 161 32.9
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.8e-10 72.0 325 26.8
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 4.1e-10 70.9 653 26.2
BcaNung04360 Brassica carinata HOM05D004923 ORTHO05D005940 5.3e-10 70.5 77 70.1
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.2e-09 69.3 279 26.5
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 1.5e-09 68.9 105 41.0
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 2.0e-09 68.6 102 40.2
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 5.9e-09 67.0 615 29.1
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.0e-08 66.2 128 46.1
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.7e-08 65.5 274 25.2
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 1.7e-08 65.5 636 20.8
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 8.5e-08 63.2 119 35.3
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 2.5e-07 61.6 171 32.2
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 3.2e-07 61.2 243 23.9


User provided reference genes

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