Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 2363.6 1205 100.0
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 2188.3 1202 92.6
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 2187.1 1206 92.7
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 2184.8 1206 92.7
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 2181.4 1202 92.4
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 2180.6 1207 92.0
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 2130.9 1207 88.8
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 2116.3 1207 88.6
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 2075.8 1204 87.5
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1993.8 1207 83.4
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1909.4 1191 80.7
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1890.2 1206 83.3
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1885.5 1175 81.3
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1873.2 1191 79.3
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1847.8 1184 78.9
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1758.8 1207 73.3
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1734.5 1209 72.8
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1734.2 1213 72.8
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1732.6 1135 77.2
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1723.0 1214 72.6
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1700.3 1205 71.5
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1686.8 1209 70.2
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1678.3 1208 70.2
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1676.4 1208 71.3
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1675.2 1209 70.2
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1673.7 1210 69.8
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1669.8 1205 69.7
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1669.1 1204 70.3
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1665.6 1212 69.7
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1661.7 1209 70.5
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1658.3 1214 69.6
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1657.9 1212 70.1
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1651.7 1210 69.5
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1643.6 1208 69.0
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1637.9 1209 69.0
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1636.3 1182 70.1
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1633.2 1211 68.9
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1628.6 1212 69.1
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1620.9 1209 69.3
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1619.8 1201 68.7
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1619.0 1204 68.0
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1616.7 1204 67.9
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1616.3 1210 68.3
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1613.6 1204 67.8
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1613.6 1206 66.8
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1609.7 1204 67.8
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1609.0 1207 67.9
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1605.1 1204 67.6
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1604.7 1204 67.6
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1600.9 1202 66.6
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1595.5 1214 66.8
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1587.4 1182 68.8
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1585.1 1170 68.6
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1583.2 1200 67.3
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1579.3 1210 66.1
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1578.5 1205 67.1
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1577.8 1200 66.0
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1570.1 1202 66.6
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1568.9 1201 66.6
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1565.1 1225 65.1
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1562.7 1186 66.4
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1558.9 1209 66.6
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1556.2 1208 66.6
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1555.8 1208 63.8
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1553.9 1201 66.2
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1553.9 1200 65.4
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1539.6 1210 64.4
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1538.5 1211 65.0
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1532.3 1199 64.8
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1527.7 1203 64.3
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1526.9 1203 64.3
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1515.7 1203 64.2
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1515.4 1205 63.5
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1513.0 1207 64.0
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1508.8 1207 63.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1508.4 1166 64.9
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1508.4 1202 63.2
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1504.2 1203 63.9
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1497.3 1206 63.1
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1494.9 1200 63.6
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1491.1 1203 62.7
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1486.9 1211 64.8
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1481.8 1184 63.1
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1471.4 1212 62.7
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1464.9 1200 63.8
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1464.5 1202 61.9
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1463.7 1198 61.5
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1459.9 1200 62.2
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1453.7 1121 65.7
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1411.4 1259 58.9
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1408.7 1208 60.6
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1398.6 1135 61.6
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1376.7 1204 59.5
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1371.7 890 78.0
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1361.3 1202 58.2
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1351.7 1201 57.0
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1323.9 983 68.7
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1322.4 1025 65.6
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1317.8 1281 56.3
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1304.7 1180 56.9
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1266.5 1221 54.5
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1190.6 1054 59.9
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1106.7 966 61.1
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1087.8 818 67.7
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 3.9e-304 1048.5 836 65.3
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 1.1e-295 1020.4 1058 55.1
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 8.8e-288 994.2 1146 48.8
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 4.8e-286 988.4 1185 48.4
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 2.3e-280 969.5 1154 48.6
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.5e-274 950.3 1154 47.7
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.8e-272 943.3 1172 48.1
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 6.8e-264 914.8 1228 42.5
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.5e-260 902.5 1225 41.4
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.7e-259 900.2 1213 43.9
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 3.3e-242 842.8 648 66.2
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.6e-233 813.9 1211 39.2
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 6.2e-217 758.8 796 52.8
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 6.0e-204 715.7 1213 35.9
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 2.9e-198 696.8 600 60.8
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.5e-191 672.9 569 60.5
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.8e-184 651.0 640 53.4
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.1e-176 623.2 538 59.1
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 7.4e-162 575.9 416 68.8
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 2.3e-155 554.3 479 62.6
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.6e-140 505.0 491 53.0
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 2.2e-113 414.8 321 64.5
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 5.1e-102 377.1 297 64.6
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 6.9e-75 287.0 267 54.3
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.4e-72 279.3 210 66.2
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 2.0e-66 258.8 209 64.6
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 5.5e-64 250.8 187 69.5
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 3.3e-53 214.9 213 56.8
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 6.3e-52 210.7 471 32.3
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.8e-51 209.1 479 31.1
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 2.2e-41 175.6 285 36.1
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.6e-39 169.5 109 77.1
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.8e-35 156.0 1260 21.7
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 8.0e-31 140.6 91 79.1
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 3.8e-25 121.7 79 83.5
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 6.5e-25 120.9 96 66.7
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 3.0e-22 112.1 63 90.5
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 6.6e-17 94.4 85 61.2
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 8.6e-17 94.0 346 26.6
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.0e-14 87.0 78 57.7
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.8e-14 86.3 75 60.0
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 5.2e-14 84.7 75 58.7
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 5.2e-14 84.7 119 42.9
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 4.9e-12 78.2 76 53.9
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 5.4e-11 74.7 49 77.6
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 5.4e-11 74.7 49 77.6
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 9.2e-11 73.9 72 51.4
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.2e-10 73.6 74 58.1
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 3.9e-09 68.6 88 47.7
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 6.6e-09 67.8 183 27.3


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