Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 9.9e-69 263.5 146 100.0
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 4.0e-62 241.5 146 92.5
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 1.2e-58 229.9 146 90.4
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 3.5e-58 228.4 147 87.8
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 1.8e-57 226.1 147 87.8
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 6.7e-57 224.2 146 89.0
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 6.7e-57 224.2 146 89.0
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 6.7e-57 224.2 146 89.0
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 3.3e-56 221.9 148 87.8
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 1.6e-55 219.5 148 87.2
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 2.6e-53 212.2 148 85.1
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 1.7e-52 209.5 146 85.6
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 1.7e-52 209.5 146 86.3
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 3.8e-52 208.4 149 85.2
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 6.4e-52 207.6 146 84.9
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 2.4e-51 205.7 143 83.2
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 1.6e-50 203.0 148 84.5
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 1.6e-50 203.0 148 84.5
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 4.5e-45 184.9 143 77.6
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 8.2e-39 164.1 113 83.2
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 5.3e-38 161.4 176 64.2
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 5.0e-36 154.8 153 66.7
BraA02t08810Z Brassica rapa HOM05D004404 ORTHO05D005070 6.9e-30 134.4 146 62.3
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 6.9e-30 134.4 149 57.7
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 5.9e-29 131.3 151 59.6
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 7.7e-29 131.0 139 57.6
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 1.0e-28 130.6 152 57.2
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 1.3e-28 130.2 152 59.2
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 5.0e-28 128.3 149 54.4
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 6.5e-28 127.9 150 55.3
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 2.5e-27 125.9 151 55.0
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 3.2e-27 125.6 147 59.2
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 4.2e-27 125.2 155 54.8
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 4.2e-27 125.2 155 54.8
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 5.5e-27 124.8 117 62.4
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 1.6e-26 123.2 142 54.9
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 2.1e-26 122.9 147 57.1
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.1e-26 122.9 147 57.1
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.1e-26 122.9 147 57.1
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.1e-26 122.9 147 57.1
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 3.6e-26 122.1 142 57.0
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.7e-26 121.7 144 55.6
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 4.7e-26 121.7 137 56.2
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 6.1e-26 121.3 143 55.2
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 1.0e-25 120.6 142 55.6
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 2.3e-25 119.4 137 54.7
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 3.0e-25 119.0 167 50.3
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 3.0e-25 119.0 150 51.3
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 3.0e-25 119.0 149 55.7
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 3.9e-25 118.6 78 82.1
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 5.1e-25 118.2 154 51.9
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.1e-24 117.1 150 54.0
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 1.5e-24 116.7 135 52.6
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 2.6e-24 115.9 137 56.2
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 2.6e-24 115.9 135 54.8
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 2.6e-24 115.9 148 55.4
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 3.3e-24 115.5 137 56.2
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 5.7e-24 114.8 147 55.8
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 5.7e-24 114.8 154 53.2
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 9.7e-24 114.0 121 59.5
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 9.7e-24 114.0 144 52.8
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 9.7e-24 114.0 148 52.0
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 1.7e-23 113.2 151 53.0
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 2.8e-23 112.5 139 54.0
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 2.8e-23 112.5 150 54.0
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 3.7e-23 112.1 145 54.5
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 3.7e-23 112.1 152 50.7
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 3.7e-23 112.1 148 51.4
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 4.8e-23 111.7 155 50.3
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 4.8e-23 111.7 91 70.3
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 4.8e-23 111.7 144 54.2
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 6.3e-23 111.3 140 50.0
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 8.2e-23 110.9 113 61.1
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 1.1e-22 110.5 151 54.3
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 1.4e-22 110.2 112 60.7
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 1.4e-22 110.2 144 53.5
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 1.8e-22 109.8 153 53.6
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 2.4e-22 109.4 130 56.2
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 3.1e-22 109.0 131 57.3
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 3.1e-22 109.0 101 67.3
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 3.1e-22 109.0 148 50.7
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 3.1e-22 109.0 128 56.2
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 4.1e-22 108.6 130 53.8
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 4.1e-22 108.6 92 65.2
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 5.3e-22 108.2 145 53.8
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 5.3e-22 108.2 133 55.6
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 7.0e-22 107.8 150 48.7
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 7.0e-22 107.8 146 53.4
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 9.1e-22 107.5 151 49.7
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 9.1e-22 107.5 108 61.1
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.2e-21 107.1 131 55.7
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 1.2e-21 107.1 148 50.7
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 1.5e-21 106.7 146 51.4
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 2.0e-21 106.3 106 60.4
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 2.6e-21 105.9 146 52.1
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 2.6e-21 105.9 134 54.5
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 2.6e-21 105.9 147 51.0
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 2.6e-21 105.9 126 54.8
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 3.4e-21 105.5 101 61.4
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 3.4e-21 105.5 94 64.9
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 4.5e-21 105.1 125 51.2
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 4.5e-21 105.1 131 55.0
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 4.5e-21 105.1 140 50.7
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 5.9e-21 104.8 97 61.9
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 5.9e-21 104.8 142 49.3
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 7.7e-21 104.4 181 45.3
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 7.7e-21 104.4 142 47.9
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 7.7e-21 104.4 134 52.2
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.3e-20 103.6 142 48.6
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 1.3e-20 103.6 109 58.7
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 1.7e-20 103.2 116 54.3
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 2.2e-20 102.8 141 46.8
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 2.9e-20 102.4 134 54.5
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 3.8e-20 102.1 93 61.3
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 3.8e-20 102.1 142 54.2
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 5.0e-20 101.7 92 62.0
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 5.0e-20 101.7 106 60.4
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 6.5e-20 101.3 133 49.6
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 6.5e-20 101.3 105 61.9
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 1.4e-19 100.1 109 57.8
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.4e-19 100.1 125 48.8
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 1.9e-19 99.8 143 49.7
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 3.2e-19 99.0 144 48.6
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 3.2e-19 99.0 146 47.3
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 9.4e-19 97.4 147 48.3
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 1.2e-18 97.1 135 51.1
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.2e-18 97.1 139 50.4
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 1.2e-18 97.1 104 53.8
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 2.1e-18 96.3 147 49.0
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 2.7e-18 95.9 104 53.8
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 4.7e-18 95.1 133 48.1
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 6.1e-18 94.7 147 49.0
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 8.0e-18 94.4 93 61.3
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 1.0e-17 94.0 94 56.4
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 1.0e-17 94.0 97 58.8
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 1.0e-17 94.0 143 46.9
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 1.4e-17 93.6 96 60.4
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 1.4e-17 93.6 113 54.0
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 3.9e-17 92.0 96 57.3
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 6.7e-17 91.3 68 69.1
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 6.7e-17 91.3 95 55.8
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 8.8e-17 90.9 91 61.5
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 2.0e-16 89.7 94 58.5
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 2.6e-16 89.4 151 45.0
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 4.4e-16 88.6 101 54.5
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 4.4e-16 88.6 109 51.4
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 7.4e-16 87.8 143 41.3
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 7.4e-16 87.8 159 45.3
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 2.2e-15 86.3 193 38.9
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 2.2e-15 86.3 85 58.8
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 4.8e-15 85.1 153 44.4
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 6.3e-15 84.7 101 52.5
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 8.2e-15 84.3 137 43.8
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 1.8e-14 83.2 88 52.3
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 1.8e-14 83.2 101 50.5
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 1.8e-14 83.2 105 49.5
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 3.1e-14 82.4 133 45.1
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 5.3e-14 81.6 46 87.0
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 1.2e-13 80.5 58 67.2
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 3.0e-09 65.9 85 49.4
C04p55220 Brassica napus HOM05D004404 ORTHO05D005070 2.8e-07 59.3 73 54.8
BolC4t27061H Brassica oleracea HOM05D000230 ORTHO05D005070 2.8e-07 59.3 73 54.8
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 1.8e-06 56.6 84 40.5
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 5.3e-06 55.1 96 32.3
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 7.0e-06 54.7 125 31.2
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 9.1e-06 54.3 84 40.5
PRCOL_00005429 Prasinoderma coloniale HOM05D004404 ORTHO05D005070 9.1e-06 54.3 62 54.8
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 9.1e-06 54.3 60 41.7


User provided reference genes

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