Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 2.8e-106 388.7 197 100.0
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 5.4e-86 321.2 197 83.2
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 2.3e-84 315.8 197 81.2
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.1e-83 313.5 197 79.2
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 3.6e-82 308.5 198 79.3
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.4e-81 306.6 197 79.7
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 3.1e-81 305.4 197 79.2
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 5.2e-81 304.7 197 79.2
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.2e-80 303.5 197 76.6
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.5e-80 303.1 197 78.7
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 7.8e-77 290.8 197 75.1
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.3e-76 290.0 198 77.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.5e-75 286.6 197 73.6
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 9.9e-72 273.9 197 69.0
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 4.6e-61 238.4 194 63.4
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.3e-58 230.3 200 62.0
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 8.1e-58 227.6 200 59.5
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.1e-57 227.3 199 60.8
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 2.4e-57 226.1 199 60.8
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 2.4e-57 226.1 199 60.8
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 3.1e-57 225.7 199 60.8
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 4.0e-57 225.3 199 59.3
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 9.0e-57 224.2 199 60.8
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 3.4e-56 222.2 199 59.8
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 4.5e-56 221.9 204 56.4
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 9.9e-56 220.7 199 58.3
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.3e-55 220.3 199 57.8
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 2.2e-55 219.5 204 55.9
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 2.2e-55 219.5 199 58.3
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 2.9e-55 219.2 198 61.1
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 3.8e-55 218.8 199 59.3
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 6.4e-55 218.0 199 57.8
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.4e-54 216.9 199 57.3
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.9e-54 216.5 199 59.3
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.9e-54 216.5 199 57.3
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 3.2e-54 215.7 199 58.8
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 3.2e-54 215.7 199 56.8
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 3.2e-54 215.7 199 59.8
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 4.2e-54 215.3 199 56.8
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 7.1e-54 214.5 204 54.9
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 9.3e-54 214.2 199 57.3
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 1.2e-53 213.8 200 57.0
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 1.6e-53 213.4 201 53.7
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 2.7e-53 212.6 199 56.8
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.7e-53 212.6 199 56.3
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 6.0e-53 211.5 200 56.0
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 6.0e-53 211.5 201 56.2
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 7.9e-53 211.1 200 55.5
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.0e-52 210.7 199 59.8
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 1.3e-52 210.3 193 55.4
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.8e-52 209.9 198 57.6
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 2.3e-52 209.5 199 60.3
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 3.0e-52 209.1 197 55.8
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 3.0e-52 209.1 199 57.3
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 6.7e-52 208.0 197 56.3
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.7e-52 208.0 203 56.2
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.1e-51 207.2 199 55.3
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 1.9e-51 206.5 197 53.8
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 5.6e-51 204.9 199 53.8
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 9.6e-51 204.1 198 54.5
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.3e-50 203.8 198 53.0
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.3e-50 203.8 193 57.0
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.6e-50 203.4 211 55.0
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.8e-50 202.6 199 55.3
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 3.7e-50 202.2 195 54.4
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 6.2e-50 201.4 195 56.9
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 8.1e-50 201.1 198 52.5
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.4e-49 200.3 206 53.4
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.4e-49 200.3 208 52.4
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.8e-49 199.9 199 53.8
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.8e-49 199.9 186 54.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.8e-49 199.9 197 52.8
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.8e-49 199.9 197 52.8
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.4e-49 199.5 206 53.4
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 3.1e-49 199.1 200 56.5
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.1e-49 199.1 197 52.3
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 4.0e-49 198.7 172 57.6
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.5e-48 196.8 197 53.3
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 2.6e-48 196.1 193 52.8
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 3.4e-48 195.7 193 56.5
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 4.5e-48 195.3 197 53.3
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 4.5e-48 195.3 198 51.0
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 7.6e-48 194.5 206 51.9
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.0e-47 194.1 193 56.0
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 1.3e-47 193.7 198 51.5
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 2.9e-47 192.6 193 58.0
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 4.9e-47 191.8 192 54.7
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 4.9e-47 191.8 211 53.1
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.9e-47 191.8 185 53.5
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 8.4e-47 191.0 198 49.0
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 2.5e-46 189.5 189 53.4
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 2.5e-46 189.5 201 52.2
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 7.1e-46 188.0 191 52.4
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.2e-45 187.2 212 50.9
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 2.7e-45 186.0 201 51.7
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 4.6e-45 185.3 191 51.3
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 4.6e-45 185.3 196 54.6
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 6.0e-45 184.9 196 51.5
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 7.9e-45 184.5 187 55.1
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.0e-44 184.1 213 51.2
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.8e-44 183.3 216 50.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 3.9e-44 182.2 195 52.3
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 3.3e-43 179.1 200 51.5
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 5.7e-43 178.3 199 52.3
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 4.8e-42 175.3 199 47.7
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 8.2e-42 174.5 198 50.5
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.1e-41 174.1 162 56.8
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.1e-41 172.6 159 56.6
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 9.0e-41 171.0 203 51.2
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.2e-40 170.6 300 39.7
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.7e-39 166.8 197 49.2
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 2.2e-39 166.4 198 51.0
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 5.0e-39 165.2 199 47.7
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.5e-38 162.9 176 52.8
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.2e-38 162.5 194 51.0
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 4.2e-38 162.2 196 50.0
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.6e-37 160.2 257 39.7
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.5e-37 159.1 188 48.9
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 4.6e-37 158.7 118 68.6
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.0e-36 157.5 118 69.5
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 3.3e-35 152.5 185 45.9
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 7.4e-35 151.4 162 50.6
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.1e-33 147.5 167 47.3
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 4.1e-33 145.6 128 53.1
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.2e-32 144.1 197 44.7
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.2e-32 144.1 198 43.9
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.4e-32 142.5 198 42.9
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 4.5e-32 142.1 192 45.3
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 3.8e-31 139.0 146 50.0
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 4.2e-30 135.6 199 42.7
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 4.2e-30 135.6 103 61.2
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 2.2e-26 123.2 130 53.1
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.4e-25 120.6 132 46.2
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 5.9e-24 115.2 124 44.4
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 2.9e-23 112.8 128 46.9
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.1e-21 106.7 104 51.0
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.7e-21 105.5 192 40.1
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 7.9e-21 104.8 103 49.5
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 1.3e-18 97.4 125 43.2
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 2.2e-18 96.7 138 41.3
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 3.5e-16 89.4 156 40.4
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 5.9e-16 88.6 100 52.0
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.7e-15 87.0 167 34.7
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 3.8e-15 85.9 137 40.1
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 3.8e-15 85.9 101 52.5
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 6.5e-15 85.1 96 52.1
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 9.4e-14 81.3 117 44.4
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 7.4e-11 71.6 57 68.4
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.8e-09 67.0 65 52.3
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 7.0e-09 65.1 188 28.2
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 1.2e-08 64.3 56 58.9
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 2.0e-08 63.5 65 50.8
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 4.5e-08 62.4 103 43.7
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 1.3e-07 60.8 92 41.3
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.1e-06 57.8 104 37.5
AL7G43980 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.9e-06 57.0 44 68.2


User provided reference genes

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