Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 0.0e+00 1119.0 562 100.0
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 3.1e-259 898.3 524 86.5
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 3.2e-256 888.3 516 88.0
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 1.5e-250 869.4 523 84.7
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 5.6e-245 850.9 521 85.4
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 5.8e-242 840.9 515 84.7
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 2.2e-241 839.0 515 84.5
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 2.2e-241 839.0 515 84.5
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 1.4e-235 819.7 519 83.4
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 2.9e-233 812.0 514 82.9
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 2.9e-233 812.0 514 82.9
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 1.6e-231 806.2 515 82.7
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 7.8e-231 803.9 516 82.8
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 7.3e-229 797.3 516 82.2
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 5.3e-227 791.2 518 80.9
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 2.6e-226 788.9 520 81.5
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 4.9e-225 784.6 519 80.9
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 6.7e-214 747.7 534 74.2
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 5.7e-197 691.4 518 71.0
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 2.1e-135 486.9 538 50.6
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 7.5e-133 478.4 516 51.0
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 9.8e-133 478.0 521 51.8
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 8.3e-132 474.9 512 51.4
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 4.1e-131 472.6 455 56.5
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 7.1e-131 471.9 516 52.1
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 9.2e-131 471.5 449 57.0
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 3.0e-129 466.5 517 49.3
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 8.6e-129 464.9 526 48.7
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 3.3e-128 463.0 516 49.6
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 2.8e-127 459.9 566 47.3
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 3.1e-126 456.4 521 49.7
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 2.6e-125 453.4 516 49.8
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 7.6e-125 451.8 524 49.4
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.3e-124 451.1 515 49.9
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 3.2e-123 446.4 514 50.0
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 3.5e-122 443.0 520 48.7
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 7.8e-122 441.8 514 49.6
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 6.6e-121 438.7 447 54.1
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 8.6e-121 438.3 519 49.5
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.1e-120 438.0 483 50.5
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 3.3e-120 436.4 516 48.6
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 7.3e-120 435.3 514 47.1
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 1.6e-119 434.1 518 48.5
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.8e-118 430.6 524 47.7
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 5.8e-117 425.6 468 50.2
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 9.9e-117 424.9 481 50.5
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.3e-116 424.5 592 43.9
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 1.3e-116 424.5 448 49.6
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 3.8e-116 422.9 520 48.1
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.0e-113 414.8 572 44.9
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 3.9e-113 412.9 522 47.1
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.1e-113 412.5 454 49.6
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 6.6e-113 412.1 449 52.1
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 1.9e-112 410.6 594 43.9
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 2.5e-112 410.2 447 51.5
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 4.3e-112 409.5 520 47.9
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 5.6e-112 409.1 478 48.1
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 3.6e-111 406.4 487 46.2
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 4.8e-111 406.0 485 49.1
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.4e-110 404.4 486 49.0
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 3.1e-110 403.3 449 49.9
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 4.4e-109 399.4 526 47.0
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 9.9e-109 398.3 519 45.7
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 2.2e-108 397.1 517 46.2
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 1.9e-107 394.0 483 48.7
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 4.2e-107 392.9 500 45.8
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.4e-107 392.5 437 49.4
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 3.5e-106 389.8 444 48.4
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 7.9e-106 388.7 449 48.8
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 5.1e-105 386.0 449 48.3
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 6.6e-105 385.6 467 46.0
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 8.7e-105 385.2 447 47.7
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 1.1e-104 384.8 475 46.7
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 7.4e-104 382.1 458 47.4
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.6e-103 380.9 521 44.9
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 8.1e-103 378.6 441 47.2
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 1.1e-102 378.3 524 42.7
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 1.8e-102 377.5 446 48.2
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 2.0e-101 374.0 516 42.8
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 1.7e-100 370.9 445 48.1
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 4.9e-100 369.4 475 44.8
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 9.3e-99 365.2 387 51.7
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.6e-98 364.4 484 43.8
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 1.3e-97 361.3 445 47.0
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 3.0e-97 360.1 511 45.0
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 8.7e-97 358.6 472 45.3
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.9e-96 357.5 355 53.5
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 7.4e-96 355.5 571 42.0
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 2.1e-95 354.0 543 40.0
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 1.2e-93 348.2 524 42.9
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 4.6e-90 336.3 444 45.7
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 3.0e-89 333.6 375 48.8
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 8.2e-87 325.5 378 46.0
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 3.6e-82 310.1 430 44.0
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 3.0e-81 307.0 452 41.4
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 1.9e-80 304.3 394 44.7
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.4e-77 293.5 309 53.1
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 3.6e-74 283.5 486 37.7
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 6.7e-73 279.3 211 71.1
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 3.7e-71 273.5 373 43.2
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 6.3e-71 272.7 454 36.3
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 5.0e-60 236.5 480 36.7
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 5.7e-56 223.0 194 63.9
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 1.7e-52 211.5 145 75.2
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 5.0e-52 209.9 315 42.5
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.0e-48 198.0 287 41.8
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 5.7e-48 196.4 466 33.5
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 8.3e-47 192.6 383 32.6
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 3.5e-45 187.2 144 67.4
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 4.2e-43 180.3 476 30.0
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.2e-42 178.7 331 36.3
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.7e-42 176.8 309 37.5
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 1.0e-41 175.6 431 29.9
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 1.4e-41 175.3 213 46.5
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.9e-31 141.0 127 60.6
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 6.4e-31 139.8 143 51.7
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 8.3e-31 139.4 257 36.6
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 2.4e-30 137.9 120 60.0
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 3.3e-27 127.5 264 31.8
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 1.3e-23 115.5 193 36.3
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.2e-18 99.0 131 41.2
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 1.3e-15 89.0 104 47.1
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 7.1e-14 83.2 199 29.6
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 2.1e-13 81.6 141 35.5
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 4.4e-08 63.9 153 30.7
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.4e-07 60.1 145 29.0
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 8.4e-07 59.7 67 43.3
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 7.1e-06 56.6 57 49.1


User provided reference genes

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