Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 3.1e-133 478.4 234 100.0
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 1.8e-120 436.0 236 92.8
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 6.8e-120 434.1 236 92.4
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 7.5e-119 430.6 235 90.6
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 6.4e-118 427.6 235 90.2
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 8.3e-118 427.2 234 90.2
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 8.0e-113 410.6 224 90.2
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 6.0e-108 394.4 238 84.5
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 1.7e-107 392.9 237 83.1
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 9.5e-106 387.1 238 81.9
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 1.2e-105 386.7 238 82.8
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 4.7e-105 384.8 238 81.9
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 2.8e-97 359.0 195 90.8
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 7.6e-95 350.9 237 75.9
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 2.7e-84 315.8 234 69.7
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 1.0e-83 313.9 233 68.2
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 2.3e-83 312.8 233 68.2
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 3.3e-82 308.9 217 74.2
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 4.3e-82 308.5 231 68.4
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 4.3e-82 308.5 230 69.1
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 7.3e-82 307.8 237 67.5
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 1.3e-81 307.0 233 66.1
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 1.6e-81 306.6 233 68.2
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 2.1e-81 306.2 199 77.4
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 2.8e-81 305.8 233 67.4
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 2.8e-81 305.8 235 67.2
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 2.8e-81 305.8 233 67.4
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 3.6e-81 305.4 233 67.0
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 6.2e-81 304.7 230 67.4
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 6.2e-81 304.7 230 67.4
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 2.4e-80 302.8 236 69.1
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 2.4e-80 302.8 236 69.1
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 2.4e-80 302.8 230 67.4
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 2.4e-80 302.8 235 66.8
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 9.0e-80 300.8 230 67.0
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 9.0e-80 300.8 235 66.4
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 3.4e-79 298.9 236 66.5
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 4.5e-79 298.5 236 68.6
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 7.6e-79 297.7 233 64.8
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 3.8e-78 295.4 211 70.1
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 1.4e-77 293.5 220 69.5
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 2.4e-77 292.7 234 65.4
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 1.6e-76 290.0 244 64.8
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 2.1e-76 289.7 233 64.4
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 2.1e-76 289.7 245 64.5
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 2.7e-76 289.3 238 63.9
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 3.9e-75 285.4 262 59.2
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 1.5e-74 283.5 231 63.2
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 2.5e-74 282.7 234 66.2
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 3.3e-74 282.3 202 71.8
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 3.3e-74 282.3 223 65.5
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 9.6e-74 280.8 228 65.4
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 1.3e-73 280.4 235 64.7
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 1.3e-73 280.4 238 64.3
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 1.6e-73 280.0 237 62.4
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 2.1e-73 279.6 229 65.1
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 2.8e-73 279.3 215 68.4
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 3.6e-73 278.9 240 63.3
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 4.8e-73 278.5 235 63.8
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 4.8e-73 278.5 234 62.4
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 6.2e-73 278.1 208 69.2
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 6.2e-73 278.1 251 60.6
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 8.1e-73 277.7 237 61.6
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 8.1e-73 277.7 214 69.2
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 8.1e-73 277.7 238 62.6
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 1.8e-72 276.6 235 63.4
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 6.9e-72 274.6 217 67.3
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 6.9e-72 274.6 215 66.5
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 1.5e-71 273.5 202 70.8
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 2.0e-71 273.1 238 61.8
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 3.4e-71 272.3 232 62.5
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 5.8e-71 271.6 234 62.4
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 9.9e-71 270.8 246 60.6
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 2.4e-69 266.2 200 67.5
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 2.3e-67 259.6 255 58.8
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 3.9e-67 258.8 206 64.6
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 1.5e-66 256.9 303 48.5
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 2.5e-66 256.1 201 64.2
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 4.3e-66 255.4 240 58.8
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 9.6e-66 254.2 201 64.2
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 3.7e-65 252.3 161 77.6
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 1.5e-63 246.9 161 75.2
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 2.6e-63 246.1 212 60.4
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 6.5e-62 241.5 224 57.1
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 1.4e-61 240.4 231 55.8
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 3.2e-61 239.2 176 69.3
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 5.5e-61 238.4 159 73.0
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 3.9e-59 232.3 158 73.4
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 2.1e-57 226.5 159 72.3
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 8.2e-57 224.6 177 64.4
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 4.1e-56 222.2 170 69.4
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 2.0e-55 219.9 181 64.1
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 8.5e-54 214.5 145 71.7
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 3.9e-51 205.7 239 51.5
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 5.5e-45 185.3 207 53.1
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 9.1e-40 167.9 114 73.7
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 5.0e-38 162.2 131 64.9
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 1.0e-35 154.5 129 65.9
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 4.2e-29 132.5 95 72.6
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 1.5e-26 124.0 93 65.6
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 2.0e-23 113.6 70 78.6
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 1.0e-19 101.3 91 56.0
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 1.4e-19 100.9 79 67.1
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 8.8e-19 98.2 74 67.6
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 8.3e-17 91.7 60 75.0
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 2.8e-09 66.6 73 53.4
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 7.0e-08 62.0 68 54.4


User provided reference genes

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