Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 0.0e+00 1182.9 617 100.0
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 0.0e+00 1157.9 617 97.7
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 0.0e+00 1147.1 618 96.9
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 0.0e+00 1146.0 618 96.8
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 0.0e+00 1143.6 618 96.6
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 0.0e+00 1142.1 616 96.3
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 0.0e+00 1128.2 617 95.0
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 0.0e+00 1127.5 651 92.2
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 0.0e+00 1104.7 618 94.0
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.3e-311 1072.4 616 89.8
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.1e-297 1026.2 574 93.7
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 3.4e-288 994.6 617 82.8
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 5.0e-287 990.7 617 82.2
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 6.5e-287 990.3 617 82.5
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 8.5e-287 989.9 617 82.2
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 5.5e-286 987.3 617 82.2
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 9.4e-286 986.5 617 81.7
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.0e-284 983.0 615 81.0
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 5.1e-284 980.7 615 81.6
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 5.1e-284 980.7 616 81.5
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 6.7e-284 980.3 616 81.2
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 8.8e-284 979.9 617 81.2
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 8.8e-284 979.9 616 81.7
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 2.0e-283 978.8 617 80.9
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 2.5e-283 978.4 617 81.4
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 7.4e-283 976.9 616 81.2
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 1.3e-282 976.1 617 81.2
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 3.7e-282 974.5 617 80.7
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 4.5e-280 967.6 616 80.7
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 7.7e-280 966.8 616 79.7
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 7.7e-280 966.8 616 80.0
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 5.0e-279 964.1 617 79.9
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 6.5e-279 963.8 615 79.5
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.2e-278 961.4 624 78.8
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 5.5e-278 960.7 616 80.7
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 5.5e-278 960.7 617 79.4
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 2.1e-277 958.7 642 77.6
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.7e-277 957.6 627 78.0
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 6.1e-277 957.2 617 79.4
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 7.9e-277 956.8 616 78.9
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 1.0e-276 956.4 617 79.3
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 2.0e-275 952.2 615 80.0
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 3.3e-275 951.4 616 78.1
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 7.4e-275 950.3 616 78.2
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 5.9e-272 940.6 617 77.6
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 7.7e-272 940.3 655 75.4
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 2.2e-271 938.7 616 77.9
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 2.2e-271 938.7 612 77.1
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 6.5e-271 937.2 612 77.0
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.2e-270 934.9 618 78.8
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 7.2e-270 933.7 615 77.6
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 2.1e-269 932.2 617 77.1
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 6.7e-268 927.2 620 77.3
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 3.3e-267 924.9 615 76.7
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 3.3e-267 924.9 615 76.7
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 4.8e-266 921.0 617 76.7
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 1.1e-265 919.8 683 71.7
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.1e-265 919.8 618 76.7
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 1.1e-265 919.8 617 76.8
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 5.9e-264 914.1 613 76.0
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 7.7e-264 913.7 608 75.8
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 2.2e-263 912.1 617 76.0
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 2.9e-263 911.8 616 76.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.9e-262 909.1 622 75.1
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 2.5e-262 908.7 628 74.4
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 5.5e-262 907.5 643 71.9
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 4.7e-261 904.4 616 74.8
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 4.0e-260 901.4 616 74.7
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 4.0e-260 901.4 752 65.7
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 7.5e-259 897.1 615 74.6
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.3e-258 896.3 622 73.6
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 2.2e-258 895.6 615 74.1
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.8e-258 895.2 615 74.3
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 8.3e-258 893.6 615 75.0
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.3e-255 886.3 574 78.4
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 9.4e-254 880.2 540 82.4
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 4.0e-252 874.8 614 73.8
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 3.4e-251 871.7 616 73.5
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 1.1e-249 866.7 617 72.3
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 7.0e-249 864.0 616 72.1
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 4.5e-248 861.3 615 71.5
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.0e-247 860.1 599 73.5
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.3e-246 855.1 601 73.2
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.8e-244 849.4 632 69.9
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 8.9e-244 847.0 616 71.4
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 2.6e-243 845.5 639 70.3
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 4.0e-236 821.6 516 80.0
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 7.5e-235 817.4 516 79.5
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 4.9e-234 814.7 574 73.7
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 2.7e-232 808.9 615 69.8
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.7e-232 808.9 616 67.2
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.7e-231 806.2 622 69.5
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 3.1e-228 795.4 512 80.7
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 2.9e-218 762.3 615 62.0
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 9.3e-209 730.7 619 60.9
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 1.6e-208 729.9 445 83.4
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 4.3e-206 721.8 468 77.1
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 2.1e-205 719.5 566 68.9
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.3e-198 695.3 556 66.7
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 3.1e-196 689.1 615 57.4
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 4.5e-187 658.7 648 52.8
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 1.0e-186 657.5 361 95.3
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 1.4e-167 594.0 360 85.0
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 8.5e-162 574.7 615 50.2
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 2.2e-154 550.1 341 83.9
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 9.4e-153 544.7 614 47.4
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.8e-148 530.4 491 62.5
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 2.7e-139 500.0 387 68.7
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 5.7e-134 482.3 364 67.9
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 7.0e-124 448.7 596 47.3
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 5.0e-122 442.6 510 46.1
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.7e-106 391.0 373 60.9
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.5e-105 387.9 281 73.7
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 1.4e-95 354.8 456 49.6
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.5e-70 271.6 175 78.3
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 2.0e-70 271.2 171 80.1
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.3e-66 258.5 182 69.2
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.6e-56 224.9 148 79.1
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.0e-53 215.7 143 79.0
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 7.2e-52 209.5 134 77.6
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 3.0e-50 204.1 117 85.5
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 5.9e-46 189.9 122 78.7
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.7e-45 188.3 155 65.2
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.2e-45 188.0 138 68.1
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 7.4e-41 172.9 106 79.2
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.8e-39 168.3 105 76.2
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 2.5e-36 157.9 104 79.8
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.6e-33 147.9 178 47.2
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 3.2e-28 131.0 100 70.0
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 5.5e-28 130.2 86 77.9
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 2.7e-27 127.9 106 55.7
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 2.4e-23 114.8 65 81.5
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 5.4e-23 113.6 73 80.8
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.9e-21 107.8 86 66.3
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 4.7e-19 100.5 58 74.1
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 4.7e-19 100.5 58 74.1
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 6.8e-18 96.7 58 74.1
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 2.0e-17 95.1 104 45.2
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 2.2e-16 91.7 54 83.3
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 8.3e-16 89.7 117 49.6
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 3.1e-15 87.8 76 59.2
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 1.3e-13 82.4 50 74.0
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 8.6e-13 79.7 53 64.2
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.6e-11 75.5 48 83.3
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 6.8e-10 70.1 57 52.6
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 2.6e-09 68.2 80 46.2
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.7e-08 65.5 42 73.8
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.9e-08 64.7 38 76.3


User provided reference genes

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